Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016264A_C01 KMC016264A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19690.1|AC009519_24 F1N19.8 [Arabidopsis thaliana] 209 2e-53
ref|NP_176632.1| plastid ribosomal protein S6, putative; protein... 209 2e-53
gb|AAF64311.1|AF250383_1 plastid ribosomal protein S6 precursor ... 199 1e-50
ref|NP_488842.1| 30S ribosomal protein S6 [Nostoc sp. PCC 7120] ... 60 2e-08
gb|ZP_00110645.1| hypothetical protein [Nostoc punctiforme] 58 7e-08
>gb|AAF19690.1|AC009519_24 F1N19.8 [Arabidopsis thaliana]
Length = 231
Score = 209 bits (531), Expect = 2e-53
Identities = 101/112 (90%), Positives = 107/112 (95%)
Frame = -1
Query: 555 QCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKK 376
QCPPGLRQYETMAVLRPDMSEDERL LTQKYEELLVAGGGMYVEVFNRGVIPLAYSI+KK
Sbjct: 119 QCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKK 178
Query: 375 NKAGETNTYLDGIYLLYTYFTKPESIVALEETLLADDDVLRSTTFKIKKRKY 220
NKAGETNTYLDGIYLL+TYFTKPESIV LE L ADDD++RS++FKIKKRKY
Sbjct: 179 NKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRSSSFKIKKRKY 230
>ref|NP_176632.1| plastid ribosomal protein S6, putative; protein id: At1g64510.1,
supported by cDNA: 15602., supported by cDNA:
gi_18252236 [Arabidopsis thaliana]
gi|18252237|gb|AAL61951.1| plastid ribosomal protein S6,
putative [Arabidopsis thaliana]
gi|21386993|gb|AAM47900.1| plastid ribosomal protein S6,
putative [Arabidopsis thaliana]
gi|21553658|gb|AAM62751.1| plastid ribosomal protein S6,
putative [Arabidopsis thaliana]
Length = 207
Score = 209 bits (531), Expect = 2e-53
Identities = 101/112 (90%), Positives = 107/112 (95%)
Frame = -1
Query: 555 QCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKK 376
QCPPGLRQYETMAVLRPDMSEDERL LTQKYEELLVAGGGMYVEVFNRGVIPLAYSI+KK
Sbjct: 95 QCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKK 154
Query: 375 NKAGETNTYLDGIYLLYTYFTKPESIVALEETLLADDDVLRSTTFKIKKRKY 220
NKAGETNTYLDGIYLL+TYFTKPESIV LE L ADDD++RS++FKIKKRKY
Sbjct: 155 NKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRSSSFKIKKRKY 206
>gb|AAF64311.1|AF250383_1 plastid ribosomal protein S6 precursor [Spinacia oleracea]
Length = 168
Score = 199 bits (507), Expect = 1e-50
Identities = 96/112 (85%), Positives = 104/112 (92%)
Frame = -1
Query: 555 QCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKK 376
QCPPGLRQYETMAVLRPDM+EDERL LTQKYEELLVAGG MYVEVFNRGVIPLAYSIK+K
Sbjct: 57 QCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRK 116
Query: 375 NKAGETNTYLDGIYLLYTYFTKPESIVALEETLLADDDVLRSTTFKIKKRKY 220
NKAGETN YLDGIYLL+TYFTKPESI LE L+ DDDV+RS++FKI+KRKY
Sbjct: 117 NKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY 168
>ref|NP_488842.1| 30S ribosomal protein S6 [Nostoc sp. PCC 7120]
gi|24212311|sp|Q8YMX2|RS6_ANASP 30S ribosomal protein S6
gi|25530230|pir||AB2406 30S ribosomal protein S6
[imported] - Nostoc sp. (strain PCC 7120)
gi|17133939|dbj|BAB76501.1| 30S ribosomal protein S6
[Nostoc sp. PCC 7120]
Length = 108
Score = 59.7 bits (143), Expect = 2e-08
Identities = 34/98 (34%), Positives = 52/98 (52%)
Frame = -1
Query: 531 YETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKKNKAGETNT 352
YET+ +LRPD+++++ KY+ LL G +EV NRG LAY IKK+
Sbjct: 5 YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDLEVQNRGKRRLAYEIKKQR------- 57
Query: 351 YLDGIYLLYTYFTKPESIVALEETLLADDDVLRSTTFK 238
DG Y+ + Y ++I LE + ++V+R T K
Sbjct: 58 --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93
>gb|ZP_00110645.1| hypothetical protein [Nostoc punctiforme]
Length = 129
Score = 58.2 bits (139), Expect = 7e-08
Identities = 33/98 (33%), Positives = 49/98 (49%)
Frame = -1
Query: 531 YETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKKNKAGETNT 352
YETM +LRPD+ +++ KY+ LL G +++ NRG LAY IKK
Sbjct: 18 YETMYILRPDLGDEQAEQAITKYQNLLRDQGAEDIQIQNRGKRRLAYEIKK--------- 68
Query: 351 YLDGIYLLYTYFTKPESIVALEETLLADDDVLRSTTFK 238
+ DGIY+ Y +I E + ++V+R T K
Sbjct: 69 HRDGIYIQLNYTAPATAIAPFERAMRLSEEVIRYLTIK 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,541,793
Number of Sequences: 1393205
Number of extensions: 9558117
Number of successful extensions: 26629
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 25665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26552
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
