Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016252A_C01 KMC016252A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-... 205 3e-52
ref|NP_567854.1| SERINE CARBOXYPEPTIDASE II - like protein; prot... 188 3e-47
sp||P08819_2 [Segment 2 of 2] Serine carboxypeptidase II chains ... 182 2e-45
pdb|3SC2|B Chain B, Serine Carboxypeptidase Ii (E.C.3.4.16.1) (C... 182 2e-45
pdb|1WHS|B Chain B, Serine Carboxypeptidase Ii (E.C.3.4.16.1) (N... 182 2e-45
>sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2)
gi|619351|gb|AAB31590.1| CP-MII.2=serine
carboxypeptidase [Hordeum vulgare=barley, cv. Alexis,
aleurone, Peptide, 436 aa] gi|6102957|emb|CAB59202.1|
serine carboxylase II-2 [Hordeum vulgare subsp. vulgare]
Length = 436
Score = 205 bits (522), Expect = 3e-52
Identities = 99/132 (75%), Positives = 110/132 (83%), Gaps = 1/132 (0%)
Frame = -2
Query: 563 VDPNHKPAKWETCSEVINTHWKDSPRTVLNVFQELIHSGLRIWVFSGNTDAVIPVTSTRY 384
V+P +KWETCSEVINT+WKD R+VL+++ ELI GLRIW+FSG+TDAVIPVTSTRY
Sbjct: 301 VNPVIGKSKWETCSEVINTNWKDCERSVLHIYHELIQYGLRIWMFSGDTDAVIPVTSTRY 360
Query: 383 SIDALKLPTVSPWRPWYDDE-EVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLFKSF 207
SIDALKLPTV+PW WYDD+ EVGGWTQ Y GL FVTVRGAGHEVPLHRPK ALTL KSF
Sbjct: 361 SIDALKLPTVTPWHAWYDDDGEVGGWTQGYKGLNFVTVRGAGHEVPLHRPKQALTLIKSF 420
Query: 206 LAGTSMPKLEQL 171
LAG MP L L
Sbjct: 421 LAGRPMPVLSDL 432
>ref|NP_567854.1| SERINE CARBOXYPEPTIDASE II - like protein; protein id: At4g30810.1,
supported by cDNA: gi_15293048 [Arabidopsis thaliana]
gi|15293049|gb|AAK93635.1| putative serine
carboxypeptidase II [Arabidopsis thaliana]
gi|22136958|gb|AAM91708.1| putative serine
carboxypeptidase II [Arabidopsis thaliana]
Length = 479
Score = 188 bits (478), Expect = 3e-47
Identities = 84/125 (67%), Positives = 104/125 (83%)
Frame = -2
Query: 563 VDPNHKPAKWETCSEVINTHWKDSPRTVLNVFQELIHSGLRIWVFSGNTDAVIPVTSTRY 384
V P P+KW+TCS+V++ HW DSP +VLN++ ELI +GLRIWVFSG+ DAV+PVTSTRY
Sbjct: 337 VPPGLAPSKWDTCSDVVSEHWNDSPSSVLNIYHELIAAGLRIWVFSGDADAVVPVTSTRY 396
Query: 383 SIDALKLPTVSPWRPWYDDEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLFKSFL 204
SIDAL L +S + PWY D +VGGW+Q+YAGL FVTVRGAGHEVPLHRPK AL LFK+F+
Sbjct: 397 SIDALNLRPLSAYGPWYLDGQVGGWSQQYAGLNFVTVRGAGHEVPLHRPKQALALFKAFI 456
Query: 203 AGTSM 189
+GT +
Sbjct: 457 SGTPL 461
>sp||P08819_2 [Segment 2 of 2] Serine carboxypeptidase II chains A and B
(Carboxypeptidase D) (CPDW-II) (CP-WII)
gi|1421108|pdb|1BCR|B Chain B, Complex Of The Wheat
Serine Carboxypeptidase, Cpdw-Ii, With The Microbial
Peptide Aldehyde Inhibitor, Antipain, And Arginine At
Room Temperature gi|1421113|pdb|1BCS|B Chain B, Complex
Of The Wheat Serine Carboxypeptidase, Cpdw-Ii, With The
Microbial Peptide Aldehyde Inhibitor, Chymostatin, And
Arginine At 100 Degrees Kelvin gi|226041|prf||1408164B
CPase II B
Length = 160
Score = 182 bits (463), Expect = 2e-45
Identities = 80/117 (68%), Positives = 98/117 (83%)
Frame = -2
Query: 536 WETCSEVINTHWKDSPRTVLNVFQELIHSGLRIWVFSGNTDAVIPVTSTRYSIDALKLPT 357
W TCS+ INTHW D+PR++L +++ELI +GLRIWVFSG+TDAV+P+T+TRYSI AL LPT
Sbjct: 37 WATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPT 96
Query: 356 VSPWRPWYDDEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLFKSFLAGTSMP 186
+ W PWYDD+EVGGW+Q Y GLT V+VRGAGHEVPLHRP+ AL LF+ FL G MP
Sbjct: 97 TTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|3SC2|B Chain B, Serine Carboxypeptidase Ii (E.C.3.4.16.1) (Cpdw-Ii)
Length = 152
Score = 182 bits (463), Expect = 2e-45
Identities = 80/117 (68%), Positives = 98/117 (83%)
Frame = -2
Query: 536 WETCSEVINTHWKDSPRTVLNVFQELIHSGLRIWVFSGNTDAVIPVTSTRYSIDALKLPT 357
W TCS+ INTHW D+PR++L +++ELI +GLRIWVFSG+TDAV+P+T+TRYSI AL LPT
Sbjct: 35 WATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPT 94
Query: 356 VSPWRPWYDDEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLFKSFLAGTSMP 186
+ W PWYDD+EVGGW+Q Y GLT V+VRGAGHEVPLHRP+ AL LF+ FL G MP
Sbjct: 95 TTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Serine Carboxypeptidase Ii (E.C.3.4.16.1) (Native Form)
Length = 153
Score = 182 bits (463), Expect = 2e-45
Identities = 80/117 (68%), Positives = 98/117 (83%)
Frame = -2
Query: 536 WETCSEVINTHWKDSPRTVLNVFQELIHSGLRIWVFSGNTDAVIPVTSTRYSIDALKLPT 357
W TCS+ INTHW D+PR++L +++ELI +GLRIWVFSG+TDAV+P+T+TRYSI AL LPT
Sbjct: 35 WATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPT 94
Query: 356 VSPWRPWYDDEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLFKSFLAGTSMP 186
+ W PWYDD+EVGGW+Q Y GLT V+VRGAGHEVPLHRP+ AL LF+ FL G MP
Sbjct: 95 TTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,820,739
Number of Sequences: 1393205
Number of extensions: 11294181
Number of successful extensions: 33621
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 32255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33505
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
