Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016225A_C01 KMC016225A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P34091|RL6_MESCR 60S RIBOSOMAL PROTEIN L6 (YL16-LIKE) gi|2803... 237 8e-62
emb|CAB76914.1| 60S ribosomal protein L6 [Cicer arietinum] 234 7e-61
gb|AAM65875.1| 60S ribosomal protein L6, putative [Arabidopsis t... 232 2e-60
ref|NP_177546.1| putative 60S ribosomal protein L6; protein id: ... 231 4e-60
ref|NP_177545.1| putative 60S ribosomal protein L6; protein id: ... 231 4e-60
>sp|P34091|RL6_MESCR 60S RIBOSOMAL PROTEIN L6 (YL16-LIKE) gi|280374|pir||S28586
ribosomal protein ML16, cytosolic - common ice plant
gi|19539|emb|CAA49175.1| ribosomal protein YL16
[Mesembryanthemum crystallinum]
Length = 234
Score = 237 bits (604), Expect = 8e-62
Identities = 118/147 (80%), Positives = 131/147 (88%)
Frame = -1
Query: 555 ASITPGTVLILLAGRFKGKRVVFLRQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKV 376
ASITPGTVLI+LAGRFKGKRVVFL+QL SGLLLVTGPFK+NGVPLRRVNQ+YVIATSTKV
Sbjct: 88 ASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKV 147
Query: 375 DVSAVKSDKFDDQYFSKEAPKKKKKGEGEFFEADKEEKNVLPPEKKDDPKTVDSALLTPI 196
D+S V +KFDD+YF K+A KK KKGEGEFFEA+K+E NVLP EKKDD K VD ALL I
Sbjct: 148 DISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAI 207
Query: 195 ESVPDLKSYLGARFSLKSGMKPHELKF 115
E VP+LK+YLGARFSLK+GMKPHEL F
Sbjct: 208 EGVPELKAYLGARFSLKAGMKPHELVF 234
>emb|CAB76914.1| 60S ribosomal protein L6 [Cicer arietinum]
Length = 233
Score = 234 bits (596), Expect = 7e-61
Identities = 118/147 (80%), Positives = 131/147 (88%)
Frame = -1
Query: 555 ASITPGTVLILLAGRFKGKRVVFLRQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKV 376
A+ITPGTVLILLAGRFKGKRVVFL+QLPSGLL +GPFKINGVPLRRVNQSYVI TSTKV
Sbjct: 87 ANITPGTVLILLAGRFKGKRVVFLKQLPSGLLTCSGPFKINGVPLRRVNQSYVIGTSTKV 146
Query: 375 DVSAVKSDKFDDQYFSKEAPKKKKKGEGEFFEADKEEKNVLPPEKKDDPKTVDSALLTPI 196
DVS+V DKFDD+YFSK A KK KGEGEFF+++KE+K VLP EKKDD KTVDS+LL I
Sbjct: 147 DVSSVNVDKFDDKYFSKVAEKKTTKGEGEFFDSEKEDKKVLPQEKKDDQKTVDSSLLKAI 206
Query: 195 ESVPDLKSYLGARFSLKSGMKPHELKF 115
E+VPDLK+ LGARFSLKSG+KPHEL F
Sbjct: 207 ETVPDLKTNLGARFSLKSGVKPHELVF 233
>gb|AAM65875.1| 60S ribosomal protein L6, putative [Arabidopsis thaliana]
Length = 233
Score = 232 bits (592), Expect = 2e-60
Identities = 115/147 (78%), Positives = 129/147 (87%)
Frame = -1
Query: 555 ASITPGTVLILLAGRFKGKRVVFLRQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKV 376
AS TPGTVLI+LAGRFKGKRVVFL+QLPSGLLLVTGPFKINGVPLRRVNQ+YVI TSTKV
Sbjct: 87 ASTTPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKV 146
Query: 375 DVSAVKSDKFDDQYFSKEAPKKKKKGEGEFFEADKEEKNVLPPEKKDDPKTVDSALLTPI 196
D+S V ++KFDD+YF K A KKKKK EGEFFEA+KEEK +P EKK+D KTVD+AL+ I
Sbjct: 147 DISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSI 206
Query: 195 ESVPDLKSYLGARFSLKSGMKPHELKF 115
E+VP+LK YLGARFSL GMKPHEL F
Sbjct: 207 EAVPELKVYLGARFSLSQGMKPHELVF 233
>ref|NP_177546.1| putative 60S ribosomal protein L6; protein id: At1g74060.1,
supported by cDNA: gi_17065091 [Arabidopsis thaliana]
gi|25406312|pir||E96768 protein 60S ribosomal protein L6
F2P9.7 [imported] - Arabidopsis thaliana
gi|12325148|gb|AAG52524.1|AC016662_18 putative 60S
ribosomal protein L6; 21879-23145 [Arabidopsis thaliana]
gi|17065092|gb|AAL32700.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
gi|27311965|gb|AAO00948.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
Length = 233
Score = 231 bits (589), Expect = 4e-60
Identities = 116/147 (78%), Positives = 128/147 (86%)
Frame = -1
Query: 555 ASITPGTVLILLAGRFKGKRVVFLRQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKV 376
ASITPGTVLI+LAGRFKGKRVVFL+QL SGLLLVTGPFKINGVPLRRVNQ+YVI TSTKV
Sbjct: 87 ASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKV 146
Query: 375 DVSAVKSDKFDDQYFSKEAPKKKKKGEGEFFEADKEEKNVLPPEKKDDPKTVDSALLTPI 196
D+S V DKFDD+YF K A KKKKK EGEFFEA+KEEK +P KKDD K VD+AL+ I
Sbjct: 147 DISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAI 206
Query: 195 ESVPDLKSYLGARFSLKSGMKPHELKF 115
E+VP+LK+YLGARFSLK GMKPHEL F
Sbjct: 207 EAVPELKTYLGARFSLKQGMKPHELVF 233
>ref|NP_177545.1| putative 60S ribosomal protein L6; protein id: At1g74050.1,
supported by cDNA: 3418., supported by cDNA:
gi_15450985, supported by cDNA: gi_19698916 [Arabidopsis
thaliana] gi|25406311|pir||D96768 protein 60S ribosomal
protein L6 F2P9.8 [imported] - Arabidopsis thaliana
gi|12325151|gb|AAG52527.1|AC016662_21 putative 60S
ribosomal protein L6; 24498-25922 [Arabidopsis thaliana]
gi|15450986|gb|AAK96764.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
gi|19698917|gb|AAL91194.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
gi|21387113|gb|AAM47960.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
gi|21592925|gb|AAM64875.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
Length = 233
Score = 231 bits (589), Expect = 4e-60
Identities = 116/147 (78%), Positives = 128/147 (86%)
Frame = -1
Query: 555 ASITPGTVLILLAGRFKGKRVVFLRQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKV 376
ASITPGTVLI+LAGRFKGKRVVFL+QL SGLLLVTGPFKINGVPLRRVNQ+YVI TSTKV
Sbjct: 87 ASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKV 146
Query: 375 DVSAVKSDKFDDQYFSKEAPKKKKKGEGEFFEADKEEKNVLPPEKKDDPKTVDSALLTPI 196
D+S V DKFDD+YF K A KKKKK EGEFFEA+KEEK +P KKDD K VD+AL+ I
Sbjct: 147 DISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAI 206
Query: 195 ESVPDLKSYLGARFSLKSGMKPHELKF 115
E+VP+LK+YLGARFSLK GMKPHEL F
Sbjct: 207 EAVPELKTYLGARFSLKQGMKPHELVF 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,119,067
Number of Sequences: 1393205
Number of extensions: 11457794
Number of successful extensions: 44583
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 38033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43189
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
