Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016214A_C01 KMC016214A_c01
(694 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51183 actin isoform B [imported] - Mimosa pudica gi|668350... 441 e-123
ref|NP_196543.1| ACTIN 2/7 (sp|P53492); protein id: At5g09810.1,... 439 e-122
dbj|BAB63635.1| putative actin [Oryza sativa (japonica cultivar-... 438 e-122
gb|AAN59956.1| actin [Hordeum vulgare] 438 e-122
gb|AAN40685.1| actin [Stevia rebaudiana] 438 e-122
>pir||T51183 actin isoform B [imported] - Mimosa pudica
gi|6683504|dbj|BAA89214.1| actin isoform B [Mimosa
pudica]
Length = 377
Score = 441 bits (1133), Expect = e-123
Identities = 217/219 (99%), Positives = 219/219 (99%)
Frame = +3
Query: 36 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEA 215
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEA
Sbjct: 1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 216 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 395
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
Query: 396 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 575
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
Query: 576 DLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLA 692
DLAGRDLTDSLMKILTERGYMFTTSAEREIVRD+KEKLA
Sbjct: 181 DLAGRDLTDSLMKILTERGYMFTTSAEREIVRDMKEKLA 219
>ref|NP_196543.1| ACTIN 2/7 (sp|P53492); protein id: At5g09810.1, supported by cDNA:
gi_1049306, supported by cDNA: gi_17065251, supported by
cDNA: gi_17381047, supported by cDNA: gi_20465864
[Arabidopsis thaliana] gi|1703108|sp|P53492|ACT7_ARATH
Actin 7 (Actin 2) gi|2129528|pir||S68107 actin 7 -
Arabidopsis thaliana gi|1049307|gb|AAA80356.1| actin-2
gi|1943863|gb|AAB52506.1| actin7
gi|9758959|dbj|BAB09402.1| ACTIN 2/7 [Arabidopsis
thaliana] gi|17065252|gb|AAL32780.1| ACTIN 2/7
[Arabidopsis thaliana] gi|17381048|gb|AAL36336.1|
putative ACTIN 2/7 protein [Arabidopsis thaliana]
gi|20465865|gb|AAM20037.1| putative actin 2/7 protein
[Arabidopsis thaliana] gi|21387189|gb|AAM47998.1| ACTIN
2/7 [Arabidopsis thaliana] gi|21539569|gb|AAM53337.1|
actin 2/7 [Arabidopsis thaliana]
Length = 377
Score = 439 bits (1129), Expect = e-122
Identities = 216/219 (98%), Positives = 218/219 (98%)
Frame = +3
Query: 36 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEA 215
MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 216 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 395
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
Query: 396 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 575
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
Query: 576 DLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLA 692
DLAGRDLTDSLMKILTERGYMFTT+AEREIVRDIKEKLA
Sbjct: 181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLA 219
>dbj|BAB63635.1| putative actin [Oryza sativa (japonica cultivar-group)]
Length = 377
Score = 438 bits (1126), Expect = e-122
Identities = 216/219 (98%), Positives = 217/219 (98%)
Frame = +3
Query: 36 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEA 215
MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 216 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 395
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
Query: 396 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 575
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
Query: 576 DLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLA 692
DLAGRDLTDSLMKILTERGY FTTSAEREIVRDIKEKLA
Sbjct: 181 DLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLA 219
>gb|AAN59956.1| actin [Hordeum vulgare]
Length = 377
Score = 438 bits (1126), Expect = e-122
Identities = 216/219 (98%), Positives = 217/219 (98%)
Frame = +3
Query: 36 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEA 215
MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 216 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 395
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
Query: 396 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 575
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
Query: 576 DLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLA 692
DLAGRDLTDSLMKILTERGY FTTSAEREIVRDIKEKLA
Sbjct: 181 DLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLA 219
>gb|AAN40685.1| actin [Stevia rebaudiana]
Length = 377
Score = 438 bits (1126), Expect = e-122
Identities = 215/219 (98%), Positives = 218/219 (99%)
Frame = +3
Query: 36 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEA 215
MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEA
Sbjct: 1 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 216 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 395
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
Query: 396 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 575
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
Query: 576 DLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLA 692
DLAGRDLTDSLMKILTERGYMFTT+AEREIVRD+KEKLA
Sbjct: 181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDMKEKLA 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 671,420,970
Number of Sequences: 1393205
Number of extensions: 17319570
Number of successful extensions: 66517
Number of sequences better than 10.0: 1450
Number of HSP's better than 10.0 without gapping: 60242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65869
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
