Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016213A_C01 KMC016213A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00876 probable glycerate dehydrogenase [imported] - Arabid... 91 1e-17
ref|NP_178105.1| putative D-isomer specific 2-hydroxyacid dehydr... 88 9e-17
dbj|BAB78682.1| putative Caulobacter crescentus D-isomer specifi... 84 2e-15
ref|NP_172716.1| hypothetical protein; protein id: At1g12550.1 [... 82 4e-15
gb|AAM69846.1| unknown [Aegilops tauschii] 78 8e-14
>pir||T00876 probable glycerate dehydrogenase [imported] - Arabidopsis thaliana
Length = 327
Score = 90.5 bits (223), Expect = 1e-17
Identities = 41/65 (63%), Positives = 53/65 (81%)
Frame = -3
Query: 595 GEIGGAGLDVFENEPHVPQELLAMNNVVLSPHCGSLTVENRISLSELLAGNLEAFFSNKP 416
GEIGGAGLDVFE+EP+VP+EL ++NVV SPH +T+E L +++ GN+EAFFSNKP
Sbjct: 262 GEIGGAGLDVFEDEPNVPKELFELDNVVFSPHSAFMTLEGLEELGKVVVGNIEAFFSNKP 321
Query: 415 LITPV 401
L+TPV
Sbjct: 322 LLTPV 326
>ref|NP_178105.1| putative D-isomer specific 2-hydroxyacid dehydrogenase; protein id:
At1g79870.1, supported by cDNA: 42333., supported by
cDNA: gi_17978982 [Arabidopsis thaliana]
gi|25283867|pir||G96829 hypothetical protein F19K16.17
[imported] - Arabidopsis thaliana
gi|12324598|gb|AAG52259.1|AC011717_27 putative D-isomer
specific 2-hydroxyacid dehydrogenase; 59386-58329
[Arabidopsis thaliana] gi|17978983|gb|AAL47452.1|
At1g79870/F19K16_17 [Arabidopsis thaliana]
gi|21360429|gb|AAM47330.1| At1g79870/F19K16_17
[Arabidopsis thaliana] gi|21593743|gb|AAM65710.1|
putative D-isomer specific 2-hydroxyacid dehydrogenase
[Arabidopsis thaliana]
Length = 313
Score = 87.8 bits (216), Expect = 9e-17
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = -3
Query: 595 GEIGGAGLDVFENEPHVPQELLAMNNVVLSPHCGSLTVENRISLSELLAGNLEAFFSNKP 416
G +GGA LDVFE EPHVP+EL + NVVL PH GS TVE R ++++L+ GNLEA FS K
Sbjct: 248 GRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAHFSGKS 307
Query: 415 LITPV 401
L+TPV
Sbjct: 308 LLTPV 312
>dbj|BAB78682.1| putative Caulobacter crescentus D-isomer specific 2-hydroxyacid
dehydrogenases family protein [Oryza sativa (japonica
cultivar-group)]
Length = 316
Score = 83.6 bits (205), Expect = 2e-15
Identities = 39/65 (60%), Positives = 51/65 (78%)
Frame = -3
Query: 595 GEIGGAGLDVFENEPHVPQELLAMNNVVLSPHCGSLTVENRISLSELLAGNLEAFFSNKP 416
G +GGAGLDVFE+EP+VP+ LL M+NVVL PH GS T E R ++++L+ GNLEA + KP
Sbjct: 251 GRLGGAGLDVFEDEPNVPEALLGMDNVVLVPHVGSATHETRTAMADLVLGNLEAHVAGKP 310
Query: 415 LITPV 401
L+T V
Sbjct: 311 LLTQV 315
>ref|NP_172716.1| hypothetical protein; protein id: At1g12550.1 [Arabidopsis
thaliana] gi|8778636|gb|AAF79644.1|AC025416_18 F5O11.29
[Arabidopsis thaliana]
gi|9502370|gb|AAF88077.1|AC025417_5 T12C24.9
[Arabidopsis thaliana]
Length = 323
Score = 82.4 bits (202), Expect = 4e-15
Identities = 39/67 (58%), Positives = 52/67 (77%)
Frame = -3
Query: 595 GEIGGAGLDVFENEPHVPQELLAMNNVVLSPHCGSLTVENRISLSELLAGNLEAFFSNKP 416
G IGGAGLDVFENEP VPQEL ++NVVLSPH T + +++++ NL+AFFSN+P
Sbjct: 256 GVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKAFFSNRP 315
Query: 415 LITPVKL 395
L++PV+L
Sbjct: 316 LLSPVQL 322
>gb|AAM69846.1| unknown [Aegilops tauschii]
Length = 573
Score = 78.2 bits (191), Expect = 8e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = -3
Query: 595 GEIGGAGLDVFENEPHVPQELLAMNNVVLSPHCGSLTVENRISLSELLAGNLEAFFSNKP 416
G I GAGLDVFE+EP+VP ELLAM NVVL+ H + T E+ L L NLEAFF P
Sbjct: 505 GRIAGAGLDVFEHEPNVPPELLAMENVVLTHHQAAFTPESVADLDRLFVDNLEAFFRGSP 564
Query: 415 LITPV 401
L+TPV
Sbjct: 565 LLTPV 569
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,163,004
Number of Sequences: 1393205
Number of extensions: 10190550
Number of successful extensions: 26395
Number of sequences better than 10.0: 384
Number of HSP's better than 10.0 without gapping: 25320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26205
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
