Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016207A_C01 KMC016207A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196487.1| putative transcriptional co-activator (KIWI); p... 123 1e-27
ref|NP_196486.1| transcriptional co-activator-like protein; prot... 93 2e-18
dbj|BAB41214.1| putative transcriptional coactivator [Brassica r... 75 6e-13
ref|NP_192830.1| putative protein; protein id: At4g10920.1, supp... 73 2e-12
dbj|BAB44036.1| P0684B02.23 [Oryza sativa (japonica cultivar-gro... 71 8e-12
>ref|NP_196487.1| putative transcriptional co-activator (KIWI); protein id:
At5g09250.1, supported by cDNA: gi_2997683 [Arabidopsis
thaliana] gi|25348085|pir||T52113 probable transcription
co-activator KIWI [imported] - Arabidopsis thaliana
gi|2997684|gb|AAC08574.1| putative transcriptional
co-activator [Arabidopsis thaliana]
gi|9955512|emb|CAC05451.1| putative transcriptional
co-activator (KIWI) [Arabidopsis thaliana]
gi|28466805|gb|AAO44011.1| At5g09250 [Arabidopsis
thaliana]
Length = 107
Score = 123 bits (309), Expect = 1e-27
Identities = 59/91 (64%), Positives = 73/91 (79%), Gaps = 1/91 (1%)
Frame = -1
Query: 507 SDADSDSHAPPKKSLKKDSDEDP-DSIVVCEISKNRRVSVRNWQGRIVVNIREFYVKDGK 331
SD +S++HAP KK K D D D IVVC ISKNRRVSVRNW G+I ++IREFYVKDGK
Sbjct: 15 SDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGK 74
Query: 330 QMPGKKGISLTMDQWNVLRNPIEEIDKAVNE 238
+PGKKGISL++DQWN LRN E+I+KA+++
Sbjct: 75 TLPGKKGISLSVDQWNTLRNHAEDIEKALSD 105
>ref|NP_196486.1| transcriptional co-activator-like protein; protein id: At5g09240.1
[Arabidopsis thaliana] gi|9955511|emb|CAC05450.1|
transcriptional co-activator-like protein [Arabidopsis
thaliana] gi|26450870|dbj|BAC42542.1| putative
transcriptional co-activator [Arabidopsis thaliana]
gi|28416823|gb|AAO42942.1| At5g09240 [Arabidopsis
thaliana]
Length = 110
Score = 92.8 bits (229), Expect = 2e-18
Identities = 49/89 (55%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Frame = -1
Query: 498 DSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRIVVNIREFYVKDGKQMP- 322
+S++HAPPKK + K +DE D I +C + KNRRV VRN GRI + IR+F+VKDG +P
Sbjct: 20 ESETHAPPKK-VAKPADEIED-IFICNLDKNRRVFVRNCNGRIWIAIRQFFVKDGITLPC 77
Query: 321 -GKKGISLTMDQWNVLRNPIEEIDKAVNE 238
K+GISL+++QWN LRN E+IDKA++E
Sbjct: 78 NSKQGISLSLEQWNDLRNHEEDIDKALSE 106
>dbj|BAB41214.1| putative transcriptional coactivator [Brassica rapa]
Length = 165
Score = 74.7 bits (182), Expect = 6e-13
Identities = 33/78 (42%), Positives = 55/78 (70%)
Frame = -1
Query: 471 KSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRIVVNIREFYVKDGKQMPGKKGISLTMD 292
K K+ D+D D +++C +S RRV+++ ++G+ +V+IRE+Y KDGK++P KGISLT +
Sbjct: 84 KEGNKEFDDDGD-LIICRLSDKRRVTIQEFRGKSLVSIREYYKKDGKELPSSKGISLTDE 142
Query: 291 QWNVLRNPIEEIDKAVNE 238
QW+ + I I+ AV +
Sbjct: 143 QWSTFKKNIPAIEAAVKK 160
>ref|NP_192830.1| putative protein; protein id: At4g10920.1, supported by cDNA:
19449., supported by cDNA: gi_2997685 [Arabidopsis
thaliana] gi|25456224|pir||T52114 probable transcription
co-activator KELP [imported] - Arabidopsis thaliana
gi|2997686|gb|AAC08575.1| putative transcriptional
co-activator [Arabidopsis thaliana]
gi|3513735|gb|AAC33951.1| contains similarity to RNA
polymerase II transcription cofactor p15 [Arabidopsis
thaliana] gi|4539366|emb|CAB40060.1| putative protein
[Arabidopsis thaliana] gi|7267790|emb|CAB81193.1|
putative protein [Arabidopsis thaliana]
gi|21554027|gb|AAM63108.1| putative transcriptional
coactivator [Arabidopsis thaliana]
gi|29028806|gb|AAO64782.1| At4g10920 [Arabidopsis
thaliana]
Length = 165
Score = 72.8 bits (177), Expect = 2e-12
Identities = 31/74 (41%), Positives = 54/74 (72%)
Frame = -1
Query: 459 KDSDEDPDSIVVCEISKNRRVSVRNWQGRIVVNIREFYVKDGKQMPGKKGISLTMDQWNV 280
K+ D+D D +++C +S RRV+++ ++G+ +V+IRE+Y KDGK++P KGISLT +QW+
Sbjct: 88 KEFDDDGD-LIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWST 146
Query: 279 LRNPIEEIDKAVNE 238
+ + I+ AV +
Sbjct: 147 FKKNMPAIENAVKK 160
>dbj|BAB44036.1| P0684B02.23 [Oryza sativa (japonica cultivar-group)]
gi|19571089|dbj|BAB86514.1| P0692C11.10 [Oryza sativa
(japonica cultivar-group)]
Length = 184
Score = 70.9 bits (172), Expect = 8e-12
Identities = 30/77 (38%), Positives = 57/77 (73%)
Frame = -1
Query: 462 KKDSDEDPDSIVVCEISKNRRVSVRNWQGRIVVNIREFYVKDGKQMPGKKGISLTMDQWN 283
K++ D++ D +++C +S RRV+++ ++G+ +++IRE+Y KDGK++P KGISLT++QW
Sbjct: 106 KREYDDEGD-LILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELPA-KGISLTVEQWE 163
Query: 282 VLRNPIEEIDKAVNESG 232
R+ + I+ A+ + G
Sbjct: 164 AFRDSVPAIEDAIKKLG 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,991,536
Number of Sequences: 1393205
Number of extensions: 9639590
Number of successful extensions: 31350
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 24569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30936
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
