Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016202A_C01 KMC016202A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084827.1| cytochrome b6 [Lotus japonicus] gi|23813953|sp|... 333 8e-91
ref|NP_051088.1| cytochrome b6 [Arabidopsis thaliana] gi|6685349... 332 3e-90
gb|AAB29194.1| PetB [Zea mays] 329 1e-89
ref|NP_054964.1| cytochrome b6 [Spinacia oleracea] gi|117820|sp|... 329 2e-89
ref|NP_039415.1| cytochrome b6 [Oryza sativa (japonica cultivar-... 328 3e-89
>ref|NP_084827.1| cytochrome b6 [Lotus japonicus] gi|23813953|sp|Q9BBQ6|CYB6_LOTJA
Cytochrome B6 gi|13359009|dbj|BAB33226.1| cytochrome B6
[Lotus japonicus]
Length = 215
Score = 333 bits (855), Expect = 8e-91
Identities = 167/170 (98%), Positives = 168/170 (98%)
Frame = -2
Query: 605 VQIATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRCSASMMVLMMILHVFRVY 426
VQ+ATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHR SASMMVLMMILHVFRVY
Sbjct: 46 VQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVY 105
Query: 425 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSV 246
LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSV
Sbjct: 106 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSV 165
Query: 245 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 96
VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFSMIRKQGISGPL 215
>ref|NP_051088.1| cytochrome b6 [Arabidopsis thaliana]
gi|6685349|sp|P56773|CYB6_ARATH Cytochrome B6
gi|5881724|dbj|BAA84415.1| cytochrome B6 [Arabidopsis
thaliana]
Length = 215
Score = 332 bits (850), Expect = 3e-90
Identities = 165/170 (97%), Positives = 168/170 (98%)
Frame = -2
Query: 605 VQIATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRCSASMMVLMMILHVFRVY 426
VQ+ATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHR SASMMVLMMILHVFRVY
Sbjct: 46 VQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVY 105
Query: 425 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSV 246
LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGS +
Sbjct: 106 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPL 165
Query: 245 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 96
VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
>gb|AAB29194.1| PetB [Zea mays]
Length = 215
Score = 329 bits (844), Expect = 1e-89
Identities = 164/170 (96%), Positives = 167/170 (97%)
Frame = -2
Query: 605 VQIATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRCSASMMVLMMILHVFRVY 426
VQ+ATGFAMTFYYRPTVTEAF+SVQYIMTEANFGWLIRSVHR SASMMVLMMILHVFRVY
Sbjct: 46 VQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVY 105
Query: 425 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSV 246
LTGGFKKPRELTWVTGVVL VLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGS +
Sbjct: 106 LTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPL 165
Query: 245 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 96
VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
>ref|NP_054964.1| cytochrome b6 [Spinacia oleracea] gi|117820|sp|P00165|CYB6_SPIOL
Cytochrome B6 gi|625192|pir||CBSP6
plastoquinol-plastocyanin reductase (EC 1.10.99.1)
cytochrome b6 - spinach chloroplast
gi|12285|emb|CAA30128.1| petB [Spinacia oleracea]
gi|7636137|emb|CAB88757.1| cytochrome b6 [Spinacia
oleracea]
Length = 215
Score = 329 bits (843), Expect = 2e-89
Identities = 163/170 (95%), Positives = 167/170 (97%)
Frame = -2
Query: 605 VQIATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRCSASMMVLMMILHVFRVY 426
VQ+ATGFAMTFYYRPTVT+AFASVQYIMTE NFGWLIRSVHR SASMMVLMMILHVFRVY
Sbjct: 46 VQVATGFAMTFYYRPTVTDAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVY 105
Query: 425 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSV 246
LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGS +
Sbjct: 106 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPL 165
Query: 245 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 96
VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
>ref|NP_039415.1| cytochrome b6 [Oryza sativa (japonica cultivar-group)]
gi|117818|sp|P12123|CYB6_ORYSA Cytochrome B6
gi|65636|pir||CBRZ6 plastoquinol-plastocyanin reductase
(EC 1.10.99.1) cytochrome b6 - rice chloroplast
gi|343209|gb|AAA85374.1| apocytochrome b6
gi|669082|emb|CAA33977.1| cytochrome B6 [Oryza sativa
(japonica cultivar-group)] gi|226638|prf||1603356BM
cytochrome b6
Length = 215
Score = 328 bits (841), Expect = 3e-89
Identities = 163/170 (95%), Positives = 167/170 (97%)
Frame = -2
Query: 605 VQIATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRCSASMMVLMMILHVFRVY 426
VQ+ATGFAMTFYYRPTVTEAF+SVQYIMTEANFGWLIRSVHR SASMMVLMMILHVFRVY
Sbjct: 46 VQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVY 105
Query: 425 LTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSV 246
LTGGFKKPRELTWVTGVVL VLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGS +
Sbjct: 106 LTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPL 165
Query: 245 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 96
VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,739,873
Number of Sequences: 1393205
Number of extensions: 10989905
Number of successful extensions: 62474
Number of sequences better than 10.0: 16919
Number of HSP's better than 10.0 without gapping: 40353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41295
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
