Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016196A_C01 KMC016196A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190001.2| putative protein; protein id: At3g44150.1, supp... 229 2e-59
pir||T49131 hypothetical protein F26G5.100 - Arabidopsis thalian... 213 1e-54
ref|NP_566401.1| expressed protein; protein id: At3g11800.1, sup... 213 2e-54
gb|AAF23196.1|AC016795_9 unknown protein [Arabidopsis thaliana] 192 4e-48
ref|NP_190432.1| hypothetical protein; protein id: At3g48630.1 [... 163 2e-39
>ref|NP_190001.2| putative protein; protein id: At3g44150.1, supported by cDNA:
gi_17529171 [Arabidopsis thaliana]
gi|17529172|gb|AAL38812.1| unknown protein [Arabidopsis
thaliana] gi|23297558|gb|AAN12895.1| unknown protein
[Arabidopsis thaliana]
Length = 246
Score = 229 bits (585), Expect = 2e-59
Identities = 107/142 (75%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
Frame = -2
Query: 600 FVADLYG-YMVAFAGRKYAARSPPAFVANSTYTVTSFTLVLEFKKGRLQNLYWKKDGCSK 424
F D YG YMVAFAGRKYAARS PAF+ANST+ VTSFTLV+EF+KGRLQNLYWK+DGC+
Sbjct: 105 FFPDNYGGYMVAFAGRKYAARSIPAFIANSTFIVTSFTLVMEFQKGRLQNLYWKRDGCAS 164
Query: 423 CSSNSKAVCLNNQDCALQTSSCKSHGGTVDCSLGIQLAFSGTDKHLSALNSWYEVKNLRQ 244
C N VCLN QDCA++T SCK GG VDCSLGIQLAFSGTDKHL+ LNSWYEV+NL+Q
Sbjct: 165 CKGNQNFVCLNKQDCAIRTPSCKGRGGAVDCSLGIQLAFSGTDKHLAVLNSWYEVENLKQ 224
Query: 243 YSLYGLYSNLRDSLTSQYDKFF 178
YSLYGLYSNL+ SLT+Q++ FF
Sbjct: 225 YSLYGLYSNLKSSLTNQFNNFF 246
>pir||T49131 hypothetical protein F26G5.100 - Arabidopsis thaliana
gi|7635460|emb|CAB88423.1| putative protein [Arabidopsis
thaliana]
Length = 240
Score = 213 bits (543), Expect = 1e-54
Identities = 101/142 (71%), Positives = 117/142 (82%), Gaps = 1/142 (0%)
Frame = -2
Query: 600 FVADLYG-YMVAFAGRKYAARSPPAFVANSTYTVTSFTLVLEFKKGRLQNLYWKKDGCSK 424
F D YG YMVAFAGRKYAARS PAF+ANST+ +V+EF+KGRLQNLYWK+DGC+
Sbjct: 105 FFPDNYGGYMVAFAGRKYAARSIPAFIANSTF------IVMEFQKGRLQNLYWKRDGCAS 158
Query: 423 CSSNSKAVCLNNQDCALQTSSCKSHGGTVDCSLGIQLAFSGTDKHLSALNSWYEVKNLRQ 244
C N VCLN QDCA++T SCK GG VDCSLGIQLAFSGTDKHL+ LNSWYEV+NL+Q
Sbjct: 159 CKGNQNFVCLNKQDCAIRTPSCKGRGGAVDCSLGIQLAFSGTDKHLAVLNSWYEVENLKQ 218
Query: 243 YSLYGLYSNLRDSLTSQYDKFF 178
YSLYGLYSNL+ SLT+Q++ FF
Sbjct: 219 YSLYGLYSNLKSSLTNQFNNFF 240
>ref|NP_566401.1| expressed protein; protein id: At3g11800.1, supported by cDNA:
gi_15028124, supported by cDNA: gi_19310798 [Arabidopsis
thaliana] gi|15028125|gb|AAK76686.1| unknown protein
[Arabidopsis thaliana] gi|19310799|gb|AAL85130.1|
unknown protein [Arabidopsis thaliana]
Length = 246
Score = 213 bits (542), Expect = 2e-54
Identities = 98/135 (72%), Positives = 116/135 (85%)
Frame = -2
Query: 582 GYMVAFAGRKYAARSPPAFVANSTYTVTSFTLVLEFKKGRLQNLYWKKDGCSKCSSNSKA 403
GYMVAFAG KYAARS P VA+S + VTSFTLVLEF+KGRL+N++WKKDGCSKCS +SK
Sbjct: 112 GYMVAFAGAKYAARSLPIMVADSNHIVTSFTLVLEFQKGRLENMFWKKDGCSKCSGDSKF 171
Query: 402 VCLNNQDCALQTSSCKSHGGTVDCSLGIQLAFSGTDKHLSALNSWYEVKNLRQYSLYGLY 223
VCLN ++CA++ +CK+ GG VDCSLGIQLAFSGTDKH +ALNSWYEV NL+QYSLYGLY
Sbjct: 172 VCLNKEECAIKPQNCKNQGGQVDCSLGIQLAFSGTDKHYTALNSWYEVANLKQYSLYGLY 231
Query: 222 SNLRDSLTSQYDKFF 178
SNL+DSLT+ + F
Sbjct: 232 SNLKDSLTNPFKNIF 246
>gb|AAF23196.1|AC016795_9 unknown protein [Arabidopsis thaliana]
Length = 127
Score = 192 bits (487), Expect = 4e-48
Identities = 90/133 (67%), Positives = 109/133 (81%)
Frame = -2
Query: 576 MVAFAGRKYAARSPPAFVANSTYTVTSFTLVLEFKKGRLQNLYWKKDGCSKCSSNSKAVC 397
MVAFAG KYAARS P VA+S + +VLEF+KGRL+N++WKKDGCSKCS +SK VC
Sbjct: 1 MVAFAGAKYAARSLPIMVADSNH------IVLEFQKGRLENMFWKKDGCSKCSGDSKFVC 54
Query: 396 LNNQDCALQTSSCKSHGGTVDCSLGIQLAFSGTDKHLSALNSWYEVKNLRQYSLYGLYSN 217
LN ++CA++ +CK+ GG VDCSLGIQLAFSGTDKH +ALNSWYEV NL+QYSLYGLYSN
Sbjct: 55 LNKEECAIKPQNCKNQGGQVDCSLGIQLAFSGTDKHYTALNSWYEVANLKQYSLYGLYSN 114
Query: 216 LRDSLTSQYDKFF 178
L+DSLT+ + F
Sbjct: 115 LKDSLTNPFKNIF 127
>ref|NP_190432.1| hypothetical protein; protein id: At3g48630.1 [Arabidopsis
thaliana] gi|11285723|pir||T46207 hypothetical protein
T8P19.140 - Arabidopsis thaliana
gi|6523094|emb|CAB62352.1| hypothetical protein
[Arabidopsis thaliana]
Length = 122
Score = 163 bits (412), Expect = 2e-39
Identities = 75/112 (66%), Positives = 87/112 (76%)
Frame = -2
Query: 513 TYTVTSFTLVLEFKKGRLQNLYWKKDGCSKCSSNSKAVCLNNQDCALQTSSCKSHGGTVD 334
TY V V+EF+KGRLQNLYWK+D C+ C N VCL Q CA++T SCK GG+V
Sbjct: 11 TYGVVMTFKVMEFQKGRLQNLYWKRDVCASCKGNQNFVCLKKQVCAIRTPSCKGRGGSVG 70
Query: 333 CSLGIQLAFSGTDKHLSALNSWYEVKNLRQYSLYGLYSNLRDSLTSQYDKFF 178
CSLGIQLAFSGTDKHL+ LNSWYEV NL+QYSLYGLYSNL+ SLT+Q + FF
Sbjct: 71 CSLGIQLAFSGTDKHLAVLNSWYEVDNLKQYSLYGLYSNLKSSLTNQLNNFF 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,415,217
Number of Sequences: 1393205
Number of extensions: 10596312
Number of successful extensions: 32026
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 30631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31957
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
