Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016183A_C01 KMC016183A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565389.1| expressed protein; protein id: At2g16530.1, sup... 130 2e-29
gb|AAK96489.1| At2g16530/F1P15.9 [Arabidopsis thaliana] gi|27363... 130 2e-29
pir||D84541 hypothetical protein At2g16530 [imported] - Arabidop... 130 2e-29
dbj|BAC07406.1| contains ESTs C72891(E2425),AU094101(E2425)~simi... 127 1e-28
ref|NP_177403.1| unknown protein; protein id: At1g72590.1 [Arabi... 126 2e-28
>ref|NP_565389.1| expressed protein; protein id: At2g16530.1, supported by cDNA:
gi_15450390 [Arabidopsis thaliana]
gi|20198183|gb|AAD26491.2| expressed protein
[Arabidopsis thaliana]
Length = 343
Score = 130 bits (326), Expect = 2e-29
Identities = 60/94 (63%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Frame = -1
Query: 660 HRILGSLRDS-RQVDEYVIPRGDWFEIVSSPHYLSEIVIYASFVVATGGTNLTIWLLFVF 484
H ILGSLR++ Q EY+IP GDWF +VSSPH+L+EIV+YA ++A+GGT++TIWLLF F
Sbjct: 249 HAILGSLRENPSQAKEYIIPYGDWFGMVSSPHFLAEIVLYAGLLIASGGTDITIWLLFGF 308
Query: 483 VVANLTFAAVETHNWYHQKFEDYPNSRLAIIPFV 382
V ANLT+AA ETH WY +KFE+YP +R AI P+V
Sbjct: 309 VAANLTYAAGETHRWYLRKFENYPANRHAIFPYV 342
>gb|AAK96489.1| At2g16530/F1P15.9 [Arabidopsis thaliana] gi|27363426|gb|AAO11632.1|
At2g16530/F1P15.9 [Arabidopsis thaliana]
Length = 343
Score = 130 bits (326), Expect = 2e-29
Identities = 60/94 (63%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Frame = -1
Query: 660 HRILGSLRDS-RQVDEYVIPRGDWFEIVSSPHYLSEIVIYASFVVATGGTNLTIWLLFVF 484
H ILGSLR++ Q EY+IP GDWF +VSSPH+L+EIV+YA ++A+GGT++TIWLLF F
Sbjct: 249 HAILGSLRENPSQAKEYIIPYGDWFGMVSSPHFLAEIVLYAGLLIASGGTDITIWLLFGF 308
Query: 483 VVANLTFAAVETHNWYHQKFEDYPNSRLAIIPFV 382
V ANLT+AA ETH WY +KFE+YP +R AI P+V
Sbjct: 309 VAANLTYAAGETHRWYLRKFENYPANRHAIFPYV 342
>pir||D84541 hypothetical protein At2g16530 [imported] - Arabidopsis thaliana
Length = 351
Score = 130 bits (326), Expect = 2e-29
Identities = 60/94 (63%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Frame = -1
Query: 660 HRILGSLRDS-RQVDEYVIPRGDWFEIVSSPHYLSEIVIYASFVVATGGTNLTIWLLFVF 484
H ILGSLR++ Q EY+IP GDWF +VSSPH+L+EIV+YA ++A+GGT++TIWLLF F
Sbjct: 257 HAILGSLRENPSQAKEYIIPYGDWFGMVSSPHFLAEIVLYAGLLIASGGTDITIWLLFGF 316
Query: 483 VVANLTFAAVETHNWYHQKFEDYPNSRLAIIPFV 382
V ANLT+AA ETH WY +KFE+YP +R AI P+V
Sbjct: 317 VAANLTYAAGETHRWYLRKFENYPANRHAIFPYV 350
>dbj|BAC07406.1| contains ESTs C72891(E2425),AU094101(E2425)~similar to Arabidopsis
thaliana chromosome 2, At2g16530~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 314
Score = 127 bits (319), Expect = 1e-28
Identities = 58/90 (64%), Positives = 71/90 (78%)
Frame = -1
Query: 651 LGSLRDSRQVDEYVIPRGDWFEIVSSPHYLSEIVIYASFVVATGGTNLTIWLLFVFVVAN 472
LGSLR+ + DEYVIP GD F VS PHYL+E+VIY +VA+G ++ +W LF+FV+ N
Sbjct: 224 LGSLREHKDYDEYVIPCGDCFNRVSCPHYLAELVIYFGMLVASGAEDIPVWFLFIFVITN 283
Query: 471 LTFAAVETHNWYHQKFEDYPNSRLAIIPFV 382
L+FAAVET+NWY QKFEDYP SR AIIPFV
Sbjct: 284 LSFAAVETYNWYLQKFEDYPRSRYAIIPFV 313
>ref|NP_177403.1| unknown protein; protein id: At1g72590.1 [Arabidopsis thaliana]
gi|25406194|pir||D96750 unknown protein F28P22.22
[imported] - Arabidopsis thaliana
gi|12323774|gb|AAG51854.1|AC010926_17 unknown protein;
74916-73528 [Arabidopsis thaliana]
Length = 320
Score = 126 bits (317), Expect = 2e-28
Identities = 59/94 (62%), Positives = 74/94 (77%), Gaps = 1/94 (1%)
Frame = -1
Query: 660 HRILGSLRD-SRQVDEYVIPRGDWFEIVSSPHYLSEIVIYASFVVATGGTNLTIWLLFVF 484
H ILGSLR+ Q EY+IP GDWFE+VS PH+L+EIV+Y ++++GGT+++IWLLF F
Sbjct: 226 HAILGSLREYPSQAKEYIIPYGDWFEMVSCPHFLAEIVLYLGLLISSGGTDISIWLLFGF 285
Query: 483 VVANLTFAAVETHNWYHQKFEDYPNSRLAIIPFV 382
V ANLT+AA ETH WY QKFE+YP SR AI P V
Sbjct: 286 VAANLTYAAGETHRWYLQKFENYPASRHAIFPHV 319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,051,088
Number of Sequences: 1393205
Number of extensions: 9887571
Number of successful extensions: 20627
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 20086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20593
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
