Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016169A_C01 KMC016169A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63025.1| unknown [Arabidopsis thaliana] 75 5e-13
ref|NP_198883.1| putative protein; protein id: At5g40670.1, supp... 75 9e-13
emb|CAD56564.1| Hypothetical protein C41C4.7b [Caenorhabditis el... 49 5e-05
pir||T19875 hypothetical protein C41C4.7 - Caenorhabditis elegans 49 7e-05
ref|NP_495704.1| Cystinosis nephropathic (45.4 kD) [Caenorhabdit... 49 7e-05
>gb|AAM63025.1| unknown [Arabidopsis thaliana]
Length = 270
Score = 75.5 bits (184), Expect = 5e-13
Identities = 31/54 (57%), Positives = 44/54 (81%)
Frame = -3
Query: 603 VDQDSWVNFYGNIGKVLLFLVSVFFDIIFIIQHYVLYPAKRSSKLVTTTDDEDQ 442
+DQ+SW NFYGN+GK LL L+S+FFDI+F+ QHYVLYP K+ SK T+++ ++
Sbjct: 207 IDQNSWKNFYGNMGKTLLSLISIFFDILFMCQHYVLYPEKKVSKSPETSEESNE 260
>ref|NP_198883.1| putative protein; protein id: At5g40670.1, supported by cDNA:
18435., supported by cDNA: gi_15529265, supported by
cDNA: gi_16974418 [Arabidopsis thaliana]
gi|13124057|sp|P57758|CTNS_ARATH Cystinosin homolog
gi|9758095|dbj|BAB08539.1| contains similarity to
nephropathic cystinosis~gene_id:MNF13.23 [Arabidopsis
thaliana] gi|15529266|gb|AAK97727.1| AT5g40670/MNF13_190
[Arabidopsis thaliana] gi|16974419|gb|AAL31135.1|
AT5g40670/MNF13_190 [Arabidopsis thaliana]
Length = 270
Score = 74.7 bits (182), Expect = 9e-13
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = -3
Query: 603 VDQDSWVNFYGNIGKVLLFLVSVFFDIIFIIQHYVLYPAKRSSKLVTTTDDEDQ 442
+DQ+SW NFYGN+GK LL L+S+FFDI+F+ QHYVLYP K+ SK T ++ ++
Sbjct: 207 IDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESNE 260
>emb|CAD56564.1| Hypothetical protein C41C4.7b [Caenorhabditis elegans]
Length = 374
Score = 48.9 bits (115), Expect = 5e-05
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -3
Query: 603 VDQDSWVNFYGNIGKVLLFLVSVFFDIIFIIQHYVLYPAKRSSK 472
V+ + W FY N K L VS+FFDIIF++QHYVLYP K
Sbjct: 323 VNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYPNAEEPK 366
>pir||T19875 hypothetical protein C41C4.7 - Caenorhabditis elegans
Length = 487
Score = 48.5 bits (114), Expect = 7e-05
Identities = 22/38 (57%), Positives = 27/38 (70%)
Frame = -3
Query: 603 VDQDSWVNFYGNIGKVLLFLVSVFFDIIFIIQHYVLYP 490
V+ + W FY N K L VS+FFDIIF++QHYVLYP
Sbjct: 406 VNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 443
>ref|NP_495704.1| Cystinosis nephropathic (45.4 kD) [Caenorhabditis elegans]
gi|13124063|sp|Q09500|CTNS_CAEEL Cystinosin homolog
gi|15718122|emb|CAA88102.2| Hypothetical protein
C41C4.7a [Caenorhabditis elegans]
Length = 404
Score = 48.5 bits (114), Expect = 7e-05
Identities = 22/38 (57%), Positives = 27/38 (70%)
Frame = -3
Query: 603 VDQDSWVNFYGNIGKVLLFLVSVFFDIIFIIQHYVLYP 490
V+ + W FY N K L VS+FFDIIF++QHYVLYP
Sbjct: 323 VNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,162,511
Number of Sequences: 1393205
Number of extensions: 9665640
Number of successful extensions: 21647
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21642
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
