Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016166A_C01 KMC016166A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00443.1|AC060755_13 putative carnitine/acylcarnitine trans... 205 3e-52
dbj|BAB08924.1| carnitine/acylcarnitine translocase-like protein... 192 2e-48
ref|NP_568670.1| mitochondrial carrier protein family; protein i... 192 2e-48
gb|AAK00455.1|AC060755_25 putative carnitine/acylcarnitine trans... 190 9e-48
ref|NP_009662.1| Mitochondrial carrier protein; Ymc2p [Saccharom... 89 4e-17
>gb|AAK00443.1|AC060755_13 putative carnitine/acylcarnitine translocase [Oryza sativa]
Length = 316
Score = 205 bits (522), Expect = 3e-52
Identities = 99/115 (86%), Positives = 107/115 (92%)
Frame = -1
Query: 554 PGNAIMFGVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVDD 375
PGNA+MFGVYEAIKQ +AGG DTS LGRGSL+VAGGLAGASFW VYPTDVVKSVIQVDD
Sbjct: 202 PGNALMFGVYEAIKQYLAGGQDTSSLGRGSLVVAGGLAGASFWGSVYPTDVVKSVIQVDD 261
Query: 374 YKNPKFSGSLDAFRKIQATEGFKGLYKGFGPAMARSIPANAACFLAYEMTRSALG 210
YKNPK+SGS+DAFRKI A +G KGLYKGFGPAMARS+PANAACFLAYE+TRSALG
Sbjct: 262 YKNPKYSGSMDAFRKILAADGVKGLYKGFGPAMARSVPANAACFLAYEVTRSALG 316
Score = 48.5 bits (114), Expect = 5e-05
Identities = 45/174 (25%), Positives = 72/174 (40%), Gaps = 40/174 (22%)
Frame = -1
Query: 548 NAIMF---GVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVD 378
NA++F G EA+ + G T +VAG AG + FL PT+++K +Q
Sbjct: 80 NALLFTVRGQMEAVLRSEPGAPLTVS----QQVVAGAGAGVAVSFLACPTELIKCRLQAQ 135
Query: 377 ---------------------------DYKNPKFSGSLDAFRKIQATE-GFKGLYKGFGP 282
K+ G +D +++ +E G GL+KG GP
Sbjct: 136 SALASAAPAAAAAAASPVGGGAATATASVAAVKYGGPVDVAKQVLRSEGGVGGLFKGLGP 195
Query: 281 AMARSIPANAACFLAYEMTR---------SALG**LILMAGLISNAQVSFPFFP 147
+AR +P NA F YE + S+LG +++AG ++ A +P
Sbjct: 196 TLAREVPGNALMFGVYEAIKQYLAGGQDTSSLGRGSLVVAGGLAGASFWGSVYP 249
Score = 47.8 bits (112), Expect = 9e-05
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = -1
Query: 461 IVAGGLAGASFWFLVYPTDVVKSVIQVDDY----KNPKFSGSLDAFRKIQATEGFKGLYK 294
+ AG + GA+ + +P D +K +Q + PKF+G++DA ++ A EG +GLYK
Sbjct: 8 LTAGTVGGAAQLVVGHPFDTIKVKLQSQPTPPPGQPPKFAGAMDAVKQTLAAEGPRGLYK 67
Query: 293 GFGPAMARSIPANAACF 243
G G +A NA F
Sbjct: 68 GMGAPLATVAAFNALLF 84
>dbj|BAB08924.1| carnitine/acylcarnitine translocase-like protein [Arabidopsis
thaliana]
Length = 294
Score = 192 bits (488), Expect = 2e-48
Identities = 90/115 (78%), Positives = 105/115 (91%)
Frame = -1
Query: 554 PGNAIMFGVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVDD 375
PGNA MF YEA K+ +AGG+DTS LG+GSLI+AGG+AGASFW +VYPTDVVKSV+QVDD
Sbjct: 180 PGNATMFAAYEAFKRFLAGGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDD 239
Query: 374 YKNPKFSGSLDAFRKIQATEGFKGLYKGFGPAMARSIPANAACFLAYEMTRSALG 210
YKNP+++GS+DAFRKI +EG KGLYKGFGPAMARS+PANAACFLAYEMTRS+LG
Sbjct: 240 YKNPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEMTRSSLG 294
Score = 53.5 bits (127), Expect = 2e-06
Identities = 45/144 (31%), Positives = 68/144 (46%), Gaps = 18/144 (12%)
Frame = -1
Query: 548 NAIMF---GVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVD 378
NA++F G E + + AG T VAG AG + FL PT+++K +
Sbjct: 80 NAVLFTVRGQMEGLLRSEAGVPLTIS----QQFVAGAGAGFAVSFLACPTELIKCRLAGA 135
Query: 377 DYKNP-----KFSGSLDAFRKIQATEG-FKGLYKGFGPAMARSIPANAACFLAYEMTR-- 222
+ K+ G +D R + +EG +GL+KG P AR +P NA F AYE +
Sbjct: 136 STTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYEAFKRF 195
Query: 221 -------SALG**LILMAGLISNA 171
S+LG ++MAG ++ A
Sbjct: 196 LAGGSDTSSLGQGSLIMAGGVAGA 219
Score = 46.6 bits (109), Expect = 2e-04
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = -1
Query: 461 IVAGGLAGASFWFLVYPTDVVKSVIQVDDY----KNPKFSGSLDAFRKIQATEGFKGLYK 294
+ +G + GA+ + +P D +K +Q + P+++G++DA ++ A+EG KGLYK
Sbjct: 8 LASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYK 67
Query: 293 GFGPAMARSIPANAACF 243
G G +A NA F
Sbjct: 68 GMGAPLATVAAFNAVLF 84
>ref|NP_568670.1| mitochondrial carrier protein family; protein id: At5g46800.1,
supported by cDNA: 13730. [Arabidopsis thaliana]
gi|24211999|sp|Q93XM7|MCAT_ARATH Mitochondrial
carnitine/acylcarnitine carrier-like protein (A BOUT DE
SOUFFLE) (Carnitine/acylcarnitine translocase-like
protein) (CAC-like protein) gi|13992452|emb|CAC38047.1|
carnitine acyl carrier-like protein [Arabidopsis
thaliana] gi|22531072|gb|AAM97040.1|
carnitine/acylcarnitine translocase-like protein
[Arabidopsis thaliana] gi|23197914|gb|AAN15484.1|
carnitine/acylcarnitine translocase-like protein
[Arabidopsis thaliana]
Length = 300
Score = 192 bits (488), Expect = 2e-48
Identities = 90/115 (78%), Positives = 105/115 (91%)
Frame = -1
Query: 554 PGNAIMFGVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVDD 375
PGNA MF YEA K+ +AGG+DTS LG+GSLI+AGG+AGASFW +VYPTDVVKSV+QVDD
Sbjct: 186 PGNATMFAAYEAFKRFLAGGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDD 245
Query: 374 YKNPKFSGSLDAFRKIQATEGFKGLYKGFGPAMARSIPANAACFLAYEMTRSALG 210
YKNP+++GS+DAFRKI +EG KGLYKGFGPAMARS+PANAACFLAYEMTRS+LG
Sbjct: 246 YKNPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEMTRSSLG 300
Score = 53.9 bits (128), Expect = 1e-06
Identities = 46/150 (30%), Positives = 68/150 (44%), Gaps = 24/150 (16%)
Frame = -1
Query: 548 NAIMF---GVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVD 378
NA++F G E + + AG T VAG AG + FL PT+++K +Q
Sbjct: 80 NAVLFTVRGQMEGLLRSEAGVPLTIS----QQFVAGAGAGFAVSFLACPTELIKCRLQAQ 135
Query: 377 D-----------YKNPKFSGSLDAFRKIQATEG-FKGLYKGFGPAMARSIPANAACFLAY 234
K+ G +D R + +EG +GL+KG P AR +P NA F AY
Sbjct: 136 GALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAY 195
Query: 233 EMTR---------SALG**LILMAGLISNA 171
E + S+LG ++MAG ++ A
Sbjct: 196 EAFKRFLAGGSDTSSLGQGSLIMAGGVAGA 225
Score = 46.6 bits (109), Expect = 2e-04
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = -1
Query: 461 IVAGGLAGASFWFLVYPTDVVKSVIQVDDY----KNPKFSGSLDAFRKIQATEGFKGLYK 294
+ +G + GA+ + +P D +K +Q + P+++G++DA ++ A+EG KGLYK
Sbjct: 8 LASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYK 67
Query: 293 GFGPAMARSIPANAACF 243
G G +A NA F
Sbjct: 68 GMGAPLATVAAFNAVLF 84
>gb|AAK00455.1|AC060755_25 putative carnitine/acylcarnitine translocase; tRNA-Gly; tRNA-Met
[Oryza sativa]
Length = 296
Score = 190 bits (483), Expect = 9e-48
Identities = 91/115 (79%), Positives = 102/115 (88%)
Frame = -1
Query: 554 PGNAIMFGVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVDD 375
PGNA+MFGVYE KQ +AGG DTS LGRGSLI++GGLAGA FW VYPTDVVKSVIQVDD
Sbjct: 182 PGNAVMFGVYEGTKQYLAGGQDTSNLGRGSLILSGGLAGAVFWLSVYPTDVVKSVIQVDD 241
Query: 374 YKNPKFSGSLDAFRKIQATEGFKGLYKGFGPAMARSIPANAACFLAYEMTRSALG 210
YK P++SGS+DAF+KI A +G KGLYKGFGPAMARS+PANAA FLAYE+TRSALG
Sbjct: 242 YKKPRYSGSVDAFKKILAADGVKGLYKGFGPAMARSVPANAATFLAYEITRSALG 296
Score = 53.1 bits (126), Expect = 2e-06
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Frame = -1
Query: 548 NAIMF---GVYEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVD 378
NA++F G EA+ + G L +VAG AG + FL PT+++K +Q
Sbjct: 80 NALLFTVRGQMEALLRSEPG----QPLTVNQQVVAGAGAGVAVSFLACPTELIKCRLQAQ 135
Query: 377 D----------YKNPKFSGSLDAFRKIQATEGFKGLYKGFGPAMARSIPANAACFLAYEM 228
PK G +D + + G KGL+KG P M R +P NA F YE
Sbjct: 136 SALAEAAAASGVALPK--GPIDVAKHVVREAGMKGLFKGLVPTMGREVPGNAVMFGVYEG 193
Query: 227 TRSAL 213
T+ L
Sbjct: 194 TKQYL 198
Score = 49.3 bits (116), Expect = 3e-05
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 4/77 (5%)
Frame = -1
Query: 461 IVAGGLAGASFWFLVYPTDVVKSVIQVDDY----KNPKFSGSLDAFRKIQATEGFKGLYK 294
+VAG + GA+ + +P D +K +Q + PK++G++DA ++ ATEG +GLYK
Sbjct: 8 LVAGTVGGAANLIVGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATEGPRGLYK 67
Query: 293 GFGPAMARSIPANAACF 243
G G +A NA F
Sbjct: 68 GMGAPLATVAAFNALLF 84
>ref|NP_009662.1| Mitochondrial carrier protein; Ymc2p [Saccharomyces cerevisiae]
gi|586784|sp|P38087|YMC2_YEAST Carrier protein YMC2,
mitochondrial precursor gi|1078116|pir||S48269
mitochondrial carrier protein YMC2 precursor - yeast
(Saccharomyces cerevisiae) gi|476060|emb|CAA55607.1|
YBR0833 [Saccharomyces cerevisiae]
gi|536390|emb|CAA85059.1| ORF YBR104w [Saccharomyces
cerevisiae]
Length = 329
Score = 89.0 bits (219), Expect = 4e-17
Identities = 48/116 (41%), Positives = 63/116 (53%), Gaps = 2/116 (1%)
Frame = -1
Query: 551 GNAIMFGVYEA-IKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTDVVKSVIQVDD 375
G F VYEA + ++I G + + L + G +G W VYP DVVKS+IQ DD
Sbjct: 212 GLGTYFLVYEALVAREIGTGLTRNEIPPWKLCLFGAFSGTMLWLTVYPLDVVKSIIQNDD 271
Query: 374 YKNPKFSGSLDAFRK-IQATEGFKGLYKGFGPAMARSIPANAACFLAYEMTRSALG 210
+ PK+ S+ K I A EG + +KGFGP M RS P N A FL +E+ LG
Sbjct: 272 LRKPKYKNSISYVAKTIYAKEGIRAFFKGFGPTMVRSAPVNGATFLTFELVMRFLG 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,417,002
Number of Sequences: 1393205
Number of extensions: 10601607
Number of successful extensions: 38285
Number of sequences better than 10.0: 855
Number of HSP's better than 10.0 without gapping: 33400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37521
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
