Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016152A_C01 KMC016152A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD31320.1|AF144636_1 osteoblast regulatory factor 3A [Gallus... 32 3.8
dbj|BAB84369.1| P0007F06.8 [Oryza sativa (japonica cultivar-group)] 32 6.5
ref|NP_207807.1| amino acid permease (rocE) [Helicobacter pylori... 32 6.5
ref|NP_112428.1| NADH dehydrogenase subunit 5 [Tetrodontophora b... 31 8.5
>gb|AAD31320.1|AF144636_1 osteoblast regulatory factor 3A [Gallus gallus]
Length = 452
Score = 32.3 bits (72), Expect = 3.8
Identities = 16/52 (30%), Positives = 25/52 (47%)
Frame = -3
Query: 416 YLLPFCFSSRYCYCLIFCYPFYMVFS*TT*GDFSAKTIPDFYKLRCCWMFWL 261
YL+ + S C+CL+FC+ FS + F + F+ CCW +L
Sbjct: 355 YLMELEYFSHSCFCLLFCFFCLFFFSLFSLFGF----VGGFFCCCCCWFLFL 402
>dbj|BAB84369.1| P0007F06.8 [Oryza sativa (japonica cultivar-group)]
Length = 1790
Score = 31.6 bits (70), Expect = 6.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 452 RICPFLVGVLTCYLLPFCFSSRYCYCLIFCYPFYMVF 342
++ PF+ +L Y + C +CLI+ +PFY+VF
Sbjct: 270 KLWPFITEMLAVYSIHTCL---LIFCLIYIWPFYIVF 303
>ref|NP_207807.1| amino acid permease (rocE) [Helicobacter pylori 26695]
gi|7428799|pir||A64647 amino acid permease (rocE) -
Helicobacter pylori (strain 26695)
gi|2314162|gb|AAD08062.1| amino acid permease (rocE)
[Helicobacter pylori 26695]
Length = 519
Score = 31.6 bits (70), Expect = 6.5
Identities = 24/90 (26%), Positives = 37/90 (40%), Gaps = 7/90 (7%)
Frame = -3
Query: 413 LLPFCFSSRYCYCLIFC-------YPFYMVFS*TT*GDFSAKTIPDFYKLRCCWMFWLEV 255
L+ +CF YC++ YP F GD++AK I WM+WL
Sbjct: 96 LIAYCFGGLVVYCIMLSLGELASVYPTTGSF-----GDYAAKFIGPGTGYMVFWMYWLGW 150
Query: 254 VQILLILAILEVMSLKMGWSGKVETNKFVI 165
V I + L + + L W + + +VI
Sbjct: 151 V-ITVALEYIAIGMLMQRWFADIPIHYWVI 179
>ref|NP_112428.1| NADH dehydrogenase subunit 5 [Tetrodontophora bielanensis]
gi|13569197|gb|AAK30947.1|AF272824_8 NADH dehydrogenase
subunit 5 [Tetrodontophora bielanensis]
Length = 570
Score = 31.2 bits (69), Expect = 8.5
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 299 DFYKLRCCWMFWLEVVQILLILAILEVMSLKMGWSG 192
+ Y +R WM +L VV ++L++ ++S+ +GW G
Sbjct: 85 EVYFVRFIWMVYLFVVSMVLLIISPNMISILLGWDG 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,435,006
Number of Sequences: 1393205
Number of extensions: 8476469
Number of successful extensions: 23178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23144
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
