Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016143A_C01 KMC016143A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89049.1| P0684C02.5 [Oryza sativa (japonica cultivar-group)] 147 1e-34
ref|NP_194432.1| putative protein; protein id: At4g27020.1, supp... 145 5e-34
ref|NP_200298.1| putative protein; protein id: At5g54870.1, supp... 144 9e-34
pir||D96724 hypothetical protein F20P5.12 [imported] - Arabidops... 111 9e-24
ref|NP_564985.1| expressed protein; protein id: At1g70160.1, sup... 111 9e-24
>dbj|BAB89049.1| P0684C02.5 [Oryza sativa (japonica cultivar-group)]
Length = 545
Score = 147 bits (370), Expect = 1e-34
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = -3
Query: 613 TEFTIKDAYVLNFFENNSSRLPKWCNDGDTVKLPYCQIKGKYRMELPGYNTMQPYPHMNE 434
TEFTIKDAY LNFFENN +RLP WCN D+VKLP+CQIKG+YRMELPGYNTMQPYPHMNE
Sbjct: 471 TEFTIKDAYSLNFFENNMTRLPVWCNKDDSVKLPFCQIKGRYRMELPGYNTMQPYPHMNE 530
Query: 433 RCPSLPTEYSRPRNC 389
RCPSLP Y+RPRNC
Sbjct: 531 RCPSLPPNYNRPRNC 545
>ref|NP_194432.1| putative protein; protein id: At4g27020.1, supported by cDNA:
gi_15982906, supported by cDNA: gi_18650638 [Arabidopsis
thaliana] gi|7452424|pir||T04825 hypothetical protein
F10M23.360 - Arabidopsis thaliana
gi|4455225|emb|CAB36548.1| putative protein [Arabidopsis
thaliana] gi|7269555|emb|CAB79557.1| putative protein
[Arabidopsis thaliana] gi|18650639|gb|AAL75889.1|
AT4g27020/F10M23_360 [Arabidopsis thaliana]
gi|23505979|gb|AAN28849.1| At4g27020/F10M23_360
[Arabidopsis thaliana]
Length = 523
Score = 145 bits (365), Expect = 5e-34
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = -3
Query: 613 TEFTIKDAYVLNFFENNSSRLPKWCNDGDTVKLPYCQIKGKYRMELPGYNTMQPYPHMNE 434
TEFTIKDAY+L FFE+N+SR PKWCND D VKLPYCQI GKYRMELPGYNTM+PYPHMNE
Sbjct: 449 TEFTIKDAYMLKFFESNASRFPKWCNDNDVVKLPYCQILGKYRMELPGYNTMEPYPHMNE 508
Query: 433 RCPSLPTEYSRPRNC 389
CPSLP +Y RP+NC
Sbjct: 509 HCPSLPPKYHRPKNC 523
>ref|NP_200298.1| putative protein; protein id: At5g54870.1, supported by cDNA:
gi_14596222 [Arabidopsis thaliana]
gi|9758267|dbj|BAB08766.1|
gene_id:MBG8.14~pir||T04825~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 531
Score = 144 bits (363), Expect = 9e-34
Identities = 61/75 (81%), Positives = 69/75 (91%)
Frame = -3
Query: 613 TEFTIKDAYVLNFFENNSSRLPKWCNDGDTVKLPYCQIKGKYRMELPGYNTMQPYPHMNE 434
TEFTIKDAY+LNFFENN+SRLP WCND D+VKLPYCQI GKYRMELPGYNTM+PY HMNE
Sbjct: 457 TEFTIKDAYMLNFFENNASRLPTWCNDNDSVKLPYCQILGKYRMELPGYNTMEPYSHMNE 516
Query: 433 RCPSLPTEYSRPRNC 389
+CP+LP +Y+RP NC
Sbjct: 517 QCPTLPPKYNRPDNC 531
>pir||D96724 hypothetical protein F20P5.12 [imported] - Arabidopsis thaliana
gi|2194125|gb|AAB61100.1| ESTs gb|R30459,gb|N38441 come
from this gene. [Arabidopsis thaliana]
Length = 551
Score = 111 bits (277), Expect = 9e-24
Identities = 48/75 (64%), Positives = 57/75 (76%)
Frame = -3
Query: 613 TEFTIKDAYVLNFFENNSSRLPKWCNDGDTVKLPYCQIKGKYRMELPGYNTMQPYPHMNE 434
TEFTI+DAY L FE+N +RLP WCN + KL +CQI G+YRMELPGYNT+ PYP+MN+
Sbjct: 478 TEFTIRDAYTLKLFESNQTRLPSWCNTEEG-KLDFCQILGEYRMELPGYNTIYPYPNMNQ 536
Query: 433 RCPSLPTEYSRPRNC 389
CPSLP Y RP C
Sbjct: 537 NCPSLPPNYERPSKC 551
>ref|NP_564985.1| expressed protein; protein id: At1g70160.1, supported by cDNA:
gi_13430575, supported by cDNA: gi_15293160 [Arabidopsis
thaliana] gi|13430576|gb|AAK25910.1|AF360200_1 unknown
protein [Arabidopsis thaliana]
gi|15293161|gb|AAK93691.1| unknown protein [Arabidopsis
thaliana]
Length = 523
Score = 111 bits (277), Expect = 9e-24
Identities = 48/75 (64%), Positives = 57/75 (76%)
Frame = -3
Query: 613 TEFTIKDAYVLNFFENNSSRLPKWCNDGDTVKLPYCQIKGKYRMELPGYNTMQPYPHMNE 434
TEFTI+DAY L FE+N +RLP WCN + KL +CQI G+YRMELPGYNT+ PYP+MN+
Sbjct: 450 TEFTIRDAYTLKLFESNQTRLPSWCNTEEG-KLDFCQILGEYRMELPGYNTIYPYPNMNQ 508
Query: 433 RCPSLPTEYSRPRNC 389
CPSLP Y RP C
Sbjct: 509 NCPSLPPNYERPSKC 523
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,603,829
Number of Sequences: 1393205
Number of extensions: 10953879
Number of successful extensions: 19088
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19074
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
