Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016135A_C01 KMC016135A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175382.1| unknown protein; protein id: At1g49590.1 [Arabi... 125 4e-28
gb|AAK74045.1| At1g49590/F14J22_9 [Arabidopsis thaliana] 115 5e-25
ref|NP_492684.1| Dauer or Aging adult Overexpression DAO-5, Puta... 36 0.40
ref|XP_232082.1| similar to catenin alpha 2 isoform 1; alpha N-c... 34 1.5
ref|NP_216679.1| pbpB [Mycobacterium tuberculosis H37Rv] gi|7478... 34 1.5
>ref|NP_175382.1| unknown protein; protein id: At1g49590.1 [Arabidopsis thaliana]
Length = 242
Score = 125 bits (315), Expect = 4e-28
Identities = 71/117 (60%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
Frame = -2
Query: 661 YSDAIGKWVTQEEAYASPHFASTTK-KASSTSQSNKGNKPHNGPLPGRVVTTSLNPTRNV 485
YSD+IG WVTQ+EAYA+ +S TK S+ G P G PGR+VT SLNP R V
Sbjct: 126 YSDSIGHWVTQDEAYAAVKTSSGTKVPLVKKPVSSSGAGPSVGKPPGRLVTASLNPKRAV 185
Query: 484 KAAPSSLSLG--KRKRPGEKPKVVSEEEKSALKAREAARKRVQEREKSLLGLYSKPY 320
K A SS+ LG KRKR EKPK VS EEK+ALKAREAARKRV++REK LLGLY++P+
Sbjct: 186 KGAASSVDLGNNKRKRQDEKPKKVSAEEKAALKAREAARKRVEDREKPLLGLYNRPF 242
>gb|AAK74045.1| At1g49590/F14J22_9 [Arabidopsis thaliana]
Length = 111
Score = 115 bits (288), Expect = 5e-25
Identities = 66/110 (60%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Frame = -2
Query: 640 WVTQEEAYASPHFASTTK-KASSTSQSNKGNKPHNGPLPGRVVTTSLNPTRNVKAAPSSL 464
WVTQ+EAYA+ +S TK S+ G P G PGR+VT SLNP R VK A SS+
Sbjct: 2 WVTQDEAYAAVKTSSGTKVPLVKKPVSSSGAGPSVGKPPGRLVTASLNPKRAVKGAASSV 61
Query: 463 SLG--KRKRPGEKPKVVSEEEKSALKAREAARKRVQEREKSLLGLYSKPY 320
LG KRKR EKPK VS EEK+ALKAREAARKRV++REK LLGLY++P+
Sbjct: 62 DLGNNKRKRQDEKPKKVSAEEKAALKAREAARKRVEDREKPLLGLYNRPF 111
>ref|NP_492684.1| Dauer or Aging adult Overexpression DAO-5, Putative nuclear
protein, nematode specific (101.1 kD) (dao-5)
[Caenorhabditis elegans] gi|7496445|pir||T19431
hypothetical protein C25A1.10 - Caenorhabditis elegans
gi|3874430|emb|CAB02755.1| C. elegans DAO-5 protein
(corresponding sequence C25A1.10) [Caenorhabditis
elegans]
Length = 971
Score = 36.2 bits (82), Expect = 0.40
Identities = 28/91 (30%), Positives = 40/91 (43%)
Frame = -2
Query: 622 AYASPHFASTTKKASSTSQSNKGNKPHNGPLPGRVVTTSLNPTRNVKAAPSSLSLGKRKR 443
A A+P AS KKA S+S S+ KP P ++ PT A+ SS S K+
Sbjct: 451 AKAAPKPAS--KKAESSSDSSDDEKPAAKSTPAKITP---KPTAKKVASSSSDSSDDEKK 505
Query: 442 PGEKPKVVSEEEKSALKAREAARKRVQEREK 350
P KP + K K E++ + +K
Sbjct: 506 PAAKPTPANATPKPVAKKAESSSDSSDDEKK 536
Score = 34.7 bits (78), Expect = 1.2
Identities = 28/82 (34%), Positives = 38/82 (46%)
Frame = -2
Query: 622 AYASPHFASTTKKASSTSQSNKGNKPHNGPLPGRVVTTSLNPTRNVKAAPSSLSLGKRKR 443
A A+P AS KKA S+S S+ KP P + T+ PT A+ SS S K+
Sbjct: 573 AKAAPKPAS--KKAESSSDSSDDEKPAAKSTPAK---TTPKPTAKKAASSSSDSSDDEKK 627
Query: 442 PGEKPKVVSEEEKSALKAREAA 377
P KP K A K +++
Sbjct: 628 PVAKPTSAKATPKPAAKKADSS 649
>ref|XP_232082.1| similar to catenin alpha 2 isoform 1; alpha N-catenin;
alpha(N)-catenin; cadherin associated protein;
cerebellar deficient folia; expressed sequence AI481747
[Mus musculus] [Rattus norvegicus]
Length = 202
Score = 34.3 bits (77), Expect = 1.5
Identities = 26/100 (26%), Positives = 42/100 (42%)
Frame = -2
Query: 640 WVTQEEAYASPHFASTTKKASSTSQSNKGNKPHNGPLPGRVVTTSLNPTRNVKAAPSSLS 461
W T+ Y H A +KA + +K GPL G VTT +N + PS
Sbjct: 52 WQTK---YEEGHSAWALRKALCSKGKGNVDKEQTGPLCGATVTTLVNTSNK---GPSGKK 105
Query: 460 LGKRKRPGEKPKVVSEEEKSALKAREAARKRVQEREKSLL 341
G+ K+ V + ++ L+ E K Q+ ++ L+
Sbjct: 106 KGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELV 145
>ref|NP_216679.1| pbpB [Mycobacterium tuberculosis H37Rv] gi|7478614|pir||G70580
probable penicillin-binding protein - Mycobacterium
tuberculosis (strain H37RV) gi|2104315|emb|CAB08664.1|
pbpB [Mycobacterium tuberculosis H37Rv]
Length = 679
Score = 34.3 bits (77), Expect = 1.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 508 SLNPTRNVKAAPSSLSLGKRKRPGEKPKVVSEEEKSALKAREAARKRVQEREKS 347
S P R ++ P + +G+RKRPG+ K + + + A K+R A R V +S
Sbjct: 14 STRPARGLRRPPGAQEVGQRKRPGKTQK--ARQAQEATKSRPATRSDVAPAGRS 65
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,077,739
Number of Sequences: 1393205
Number of extensions: 12059670
Number of successful extensions: 41207
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 38929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41077
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
