Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016124A_C01 KMC016124A_c01
(672 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02424.1| oxidoreductase, short-chain dehydrogenase/reduct... 192 3e-48
ref|NP_187885.1| unknown protein; protein id: At3g12790.1 [Arabi... 192 3e-48
ref|NP_178765.1| unknown protein; protein id: At2g07640.1 [Arabi... 145 6e-34
pir||G86486 hypothetical protein F28J9.2 - Arabidopsis thaliana ... 137 2e-31
ref|NP_174871.1| unknown protein; protein id: At1g36580.1 [Arabi... 105 4e-22
>dbj|BAB02424.1| oxidoreductase, short-chain dehydrogenase/reductase family-like
protein [Arabidopsis thaliana]
gi|18252923|gb|AAL62388.1| unknown protein [Arabidopsis
thaliana] gi|21389641|gb|AAM48019.1| unknown protein
[Arabidopsis thaliana]
Length = 298
Score = 192 bits (489), Expect = 3e-48
Identities = 87/113 (76%), Positives = 102/113 (89%)
Frame = -2
Query: 671 EWGTDYDIRVNGIAPGPISGTPGMSKLAPDEINNXSKDYMPLYKEGEKWDIAMAALFLVS 492
EWGTDYDIRVNGIAPGPI GTPGMSKL P+EI N +++YMPLYK GEKWDIAMAAL+L
Sbjct: 186 EWGTDYDIRVNGIAPGPIGGTPGMSKLVPEEIENKTREYMPLYKVGEKWDIAMAALYLSC 245
Query: 491 DAGKYINGDTLIVDGGLWLSRPRHLPKEAVKQASRAIEKRSRNQPIGVPKSKL 333
D+GKY++G T++VDGGLWLS+PRHLPKEAVKQ SRA+EKRSR +P+G+P SKL
Sbjct: 246 DSGKYVSGLTMVVDGGLWLSKPRHLPKEAVKQLSRAVEKRSRAKPVGLPTSKL 298
>ref|NP_187885.1| unknown protein; protein id: At3g12790.1 [Arabidopsis thaliana]
Length = 172
Score = 192 bits (489), Expect = 3e-48
Identities = 87/113 (76%), Positives = 102/113 (89%)
Frame = -2
Query: 671 EWGTDYDIRVNGIAPGPISGTPGMSKLAPDEINNXSKDYMPLYKEGEKWDIAMAALFLVS 492
EWGTDYDIRVNGIAPGPI GTPGMSKL P+EI N +++YMPLYK GEKWDIAMAAL+L
Sbjct: 60 EWGTDYDIRVNGIAPGPIGGTPGMSKLVPEEIENKTREYMPLYKVGEKWDIAMAALYLSC 119
Query: 491 DAGKYINGDTLIVDGGLWLSRPRHLPKEAVKQASRAIEKRSRNQPIGVPKSKL 333
D+GKY++G T++VDGGLWLS+PRHLPKEAVKQ SRA+EKRSR +P+G+P SKL
Sbjct: 120 DSGKYVSGLTMVVDGGLWLSKPRHLPKEAVKQLSRAVEKRSRAKPVGLPTSKL 172
>ref|NP_178765.1| unknown protein; protein id: At2g07640.1 [Arabidopsis thaliana]
gi|25411311|pir||B84487 hypothetical protein At2g07640
[imported] - Arabidopsis thaliana
gi|5001455|gb|AAD37022.1| unknown protein [Arabidopsis
thaliana]
Length = 156
Score = 145 bits (365), Expect = 6e-34
Identities = 66/88 (75%), Positives = 77/88 (87%)
Frame = -2
Query: 671 EWGTDYDIRVNGIAPGPISGTPGMSKLAPDEINNXSKDYMPLYKEGEKWDIAMAALFLVS 492
EWGTDYDIRVNGIA GPI GTPGMSKL P+EI N +++YMPLYK GEKWDIAMAAL+L
Sbjct: 60 EWGTDYDIRVNGIATGPIGGTPGMSKLVPEEIENKTREYMPLYKLGEKWDIAMAALYLSC 119
Query: 491 DAGKYINGDTLIVDGGLWLSRPRHLPKE 408
D+GKY++G T++VDGGL LS+PRHL KE
Sbjct: 120 DSGKYMSGLTMVVDGGLCLSKPRHLAKE 147
>pir||G86486 hypothetical protein F28J9.2 - Arabidopsis thaliana
gi|6272372|gb|AAF06078.1|AC007918_2 Contains PF|00678
Short chain dehydrogenase/reductase C-terminus domain.
[Arabidopsis thaliana]
Length = 186
Score = 137 bits (344), Expect = 2e-31
Identities = 67/102 (65%), Positives = 80/102 (77%)
Frame = -2
Query: 671 EWGTDYDIRVNGIAPGPISGTPGMSKLAPDEINNXSKDYMPLYKEGEKWDIAMAALFLVS 492
EWGTDYDIRVN IAPGPI + P+EI N +++YMPLYK GEKWDIAMAAL+L
Sbjct: 45 EWGTDYDIRVNRIAPGPIG-------VVPEEIENKTREYMPLYKLGEKWDIAMAALYLSC 97
Query: 491 DAGKYINGDTLIVDGGLWLSRPRHLPKEAVKQASRAIEKRSR 366
D+GKY++G TL+VD L LS+PRHL KEAVKQ SRA+ K+SR
Sbjct: 98 DSGKYVSGLTLVVDAELCLSKPRHLAKEAVKQLSRAVAKKSR 139
>ref|NP_174871.1| unknown protein; protein id: At1g36580.1 [Arabidopsis thaliana]
Length = 237
Score = 105 bits (263), Expect = 4e-22
Identities = 57/102 (55%), Positives = 65/102 (62%)
Frame = -2
Query: 671 EWGTDYDIRVNGIAPGPISGTPGMSKLAPDEINNXSKDYMPLYKEGEKWDIAMAALFLVS 492
EWGTDYDIRVN IAPGPI GEKWDIAMAAL+L
Sbjct: 31 EWGTDYDIRVNRIAPGPI---------------------------GEKWDIAMAALYLSC 63
Query: 491 DAGKYINGDTLIVDGGLWLSRPRHLPKEAVKQASRAIEKRSR 366
D+GKY++G TL+VD L LS+PRHL KEAVKQ SRA+ K+SR
Sbjct: 64 DSGKYVSGLTLVVDAELCLSKPRHLAKEAVKQLSRAVAKKSR 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,657,402
Number of Sequences: 1393205
Number of extensions: 12959389
Number of successful extensions: 34784
Number of sequences better than 10.0: 1376
Number of HSP's better than 10.0 without gapping: 33391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34535
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
