Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016111A_C01 KMC016111A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB92919.1| P0460C04.11 [Oryza sativa (japonica cultivar-gro... 169 2e-41
ref|NP_191155.1| putative protein; protein id: At3g55960.1, supp... 166 2e-40
dbj|BAC57274.1| OJ1559_F09.7 [Oryza sativa (japonica cultivar-gr... 63 2e-09
ref|NP_196747.1| putative protein; protein id: At5g11860.1, supp... 60 1e-08
gb|AAO20054.1| putative NLI interacting factor [Oryza sativa (ja... 59 3e-08
>dbj|BAB92919.1| P0460C04.11 [Oryza sativa (japonica cultivar-group)]
Length = 319
Score = 169 bits (427), Expect = 2e-41
Identities = 75/99 (75%), Positives = 88/99 (88%)
Frame = -2
Query: 530 RLYRPSTISTEHREHVKDLTCISKDLCRIVIVDNNPFSFLLQPDNGIPCISFSAGQPCDT 351
RLYRPST++TE+REHVKDL+C+SKD CR+VIVDNNPFSF+LQP NGIPC+ FSAGQ D
Sbjct: 215 RLYRPSTVTTEYREHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDN 274
Query: 350 QLLDVILPLLKHLSAEKDVRHVLYEQFHMPEWFQKQGIP 234
QL++VI PLLKHLS ++DVR LYE+FHMPEWFQK GIP
Sbjct: 275 QLMEVIFPLLKHLSIQRDVRPALYERFHMPEWFQKHGIP 313
>ref|NP_191155.1| putative protein; protein id: At3g55960.1, supported by cDNA:
12627., supported by cDNA: gi_20466679 [Arabidopsis
thaliana] gi|11357691|pir||T49208 hypothetical protein
F27K19.140 - Arabidopsis thaliana
gi|7573491|emb|CAB87850.1| putative protein [Arabidopsis
thaliana] gi|20466680|gb|AAM20657.1| putative protein
[Arabidopsis thaliana] gi|21537285|gb|AAM61626.1|
unknown [Arabidopsis thaliana]
gi|23198192|gb|AAN15623.1| putative protein [Arabidopsis
thaliana]
Length = 305
Score = 166 bits (420), Expect = 2e-40
Identities = 78/101 (77%), Positives = 88/101 (86%)
Frame = -2
Query: 530 RLYRPSTISTEHREHVKDLTCISKDLCRIVIVDNNPFSFLLQPDNGIPCISFSAGQPCDT 351
RLYRPST+ST++R+HVKDL SK++CR VIVDNNPFSFLLQP NGIPCI+FSAGQP DT
Sbjct: 201 RLYRPSTVSTQYRDHVKDLLSTSKNMCRTVIVDNNPFSFLLQPSNGIPCIAFSAGQPNDT 260
Query: 350 QLLDVILPLLKHLSAEKDVRHVLYEQFHMPEWFQKQGIPAS 228
QLLDVILPLLK LS E DVR LY++F MPEWF+KQGIP S
Sbjct: 261 QLLDVILPLLKQLSEEDDVRPTLYDRFRMPEWFEKQGIPPS 301
>dbj|BAC57274.1| OJ1559_F09.7 [Oryza sativa (japonica cultivar-group)]
Length = 462
Score = 62.8 bits (151), Expect = 2e-09
Identities = 39/91 (42%), Positives = 57/91 (61%)
Frame = -2
Query: 530 RLYRPSTISTEHREHVKDLTCISKDLCRIVIVDNNPFSFLLQPDNGIPCISFSAGQPCDT 351
R+YR S + E ++KDLT + +DL RI+IVDN+P +F Q DNGIP S+ P D
Sbjct: 361 RVYRDSCVYVEGN-YLKDLTVLGRDLTRIMIVDNSPQAFGFQLDNGIPIESW-FDDPNDQ 418
Query: 350 QLLDVILPLLKHLSAEKDVRHVLYEQFHMPE 258
+LL +LP L+ L +DVR + +F++ E
Sbjct: 419 ELLK-LLPFLESLVGVEDVRPYIARKFNLRE 448
>ref|NP_196747.1| putative protein; protein id: At5g11860.1, supported by cDNA:
151766. [Arabidopsis thaliana] gi|11282308|pir||T48545
hypothetical protein F14F18.30 - Arabidopsis thaliana
gi|7573353|emb|CAB87659.1| putative protein [Arabidopsis
thaliana] gi|21553575|gb|AAM62668.1| unknown
[Arabidopsis thaliana]
Length = 305
Score = 60.5 bits (145), Expect = 1e-08
Identities = 34/91 (37%), Positives = 59/91 (64%)
Frame = -2
Query: 530 RLYRPSTISTEHREHVKDLTCISKDLCRIVIVDNNPFSFLLQPDNGIPCISFSAGQPCDT 351
R+YR S + + ++KDL+ + +DL R++IVDN+P +F Q +NG+P S+ P D
Sbjct: 197 RVYRDSCVFFDGN-YLKDLSVLGRDLSRVIIVDNSPQAFGFQVENGVPIESW-FNDPSDK 254
Query: 350 QLLDVILPLLKHLSAEKDVRHVLYEQFHMPE 258
+LL +LP L+ L +DVR ++ ++F++ E
Sbjct: 255 ELLH-LLPFLESLIGVEDVRPMIAKKFNLRE 284
>gb|AAO20054.1| putative NLI interacting factor [Oryza sativa (japonica
cultivar-group)] gi|28269415|gb|AAO37958.1| putative
NLI-interacting factor [Oryza sativa (japonica
cultivar-group)]
Length = 444
Score = 59.3 bits (142), Expect = 3e-08
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = -2
Query: 530 RLYRPSTISTEHREHVKDLTCISKDLCRIVIVDNNPFSFLLQPDNGIPCISFSAGQPCDT 351
R+YR S + E ++KDL+ + +DL R+VIVDN+P +F Q DNG+P S+ + D
Sbjct: 345 RVYRESCLFVEGN-YLKDLSVLGRDLARVVIVDNSPQAFGFQLDNGVPIESWFDDRN-DR 402
Query: 350 QLLDVILPLLKHLSAEKDVRHVLYEQFHMPE 258
+LL +LP L+ L +DVR + +F++ E
Sbjct: 403 ELL-TLLPFLQSLVGVEDVRPCIARKFNLRE 432
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,992,251
Number of Sequences: 1393205
Number of extensions: 9078477
Number of successful extensions: 30478
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 29858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30451
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
