Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016095A_C01 KMC016095A_c01
(825 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC72364.1| surface antigen ariel1 [Entamoeba histolytica] 45 0.002
ref|NP_224041.1| putative [Helicobacter pylori J99] gi|11387373|... 43 0.006
ref|NP_281728.1| putative integral memnbrane protein [Campylobac... 41 0.025
ref|NP_647382.1| ORFID:MW2565~hypothetical protein, similar to a... 40 0.032
ref|NP_373168.1| hypothetical protein [Staphylococcus aureus sub... 40 0.032
>gb|AAC72364.1| surface antigen ariel1 [Entamoeba histolytica]
Length = 215
Score = 44.7 bits (104), Expect = 0.002
Identities = 29/107 (27%), Positives = 47/107 (43%)
Frame = +1
Query: 160 ERNTNKPHNT*NKDPTSSAKQKDPIGSENHTPYSWDPKPKQTGTKKNNHPRPQKTRNRSD 339
E + NKP+ + N P+ S+ K S N S D KP ++ K N K S+
Sbjct: 84 ESSDNKPNESSNNKPSESSNNKPDESSNNKPNESSDNKPNESSNNKPNESSNNKPSESSN 143
Query: 340 DKIDQNGSSKHLHSTNQGSRGI*KPKHKPGSTSTQINHASPDQKQKE 480
+K D++ ++K S++ +KP +S + S D K E
Sbjct: 144 NKPDESSNNKPNESSD----------NKPNESSNNKPNESSDNKPNE 180
Score = 42.0 bits (97), Expect = 0.011
Identities = 27/109 (24%), Positives = 49/109 (44%)
Frame = +1
Query: 154 ITERNTNKPHNT*NKDPTSSAKQKDPIGSENHTPYSWDPKPKQTGTKKNNHPRPQKTRNR 333
+ E + N+P + N P S+ K S+N S + KP ++ K + K
Sbjct: 58 LDENSNNQPDESSNNKPNESSDNKPNESSDNKPNESSNNKPSESSNNKPDESSNNKPNES 117
Query: 334 SDDKIDQNGSSKHLHSTNQGSRGI*KPKHKPGSTSTQINHASPDQKQKE 480
SD+K +++ ++K S+N ++ +KP +S + S D K E
Sbjct: 118 SDNKPNESSNNKPNESSN--NKPSESSNNKPDESSNNKPNESSDNKPNE 164
Score = 39.7 bits (91), Expect = 0.055
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = +1
Query: 157 TERNTNKPHNT*NKDPTSSAKQKDPIGSENHTPYSWDPKPKQTGTKKNNHPRPQKTRNRS 336
+E + NKP + N P S+ K S N S + KP ++ K + K S
Sbjct: 99 SESSNNKPDESSNNKPNESSDNKPNESSNNKPNESSNNKPSESSNNKPDESSNNKPNESS 158
Query: 337 DDKIDQNGSSKHLHSTNQGSRGI*KPKHKPGSTS 438
D+K +++ ++K S++ +KPGS+S
Sbjct: 159 DNKPNESSNNKPNESSDNKPNE--SSNNKPGSSS 190
Score = 32.7 bits (73), Expect = 6.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 ERNTNKPHNT*NKDPTSSAKQKDPIGSENHTPYSWDPKPKQTGTKKNNHPRPQKTRNRSD 339
E + NKP + N P S+ K S+N S + KP ++ K N K + SD
Sbjct: 132 ESSNNKPSESSNNKPDESSNNKPNESSDNKPNESSNNKPNESSDNKPNESSNNKPGSSSD 191
Query: 340 --DKIDQNGS 363
D +D S
Sbjct: 192 NYDNLDAASS 201
>ref|NP_224041.1| putative [Helicobacter pylori J99] gi|11387373|sp|Q9ZJI6|YE30_HELPJ
Hypothetical protein JHP1323 gi|7465002|pir||F71821
hypothetical protein jhp1323 - Helicobacter pylori
(strain J99) gi|4155934|gb|AAD06901.1| putative
[Helicobacter pylori J99]
Length = 692
Score = 42.7 bits (99), Expect = 0.006
Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 9/87 (10%)
Frame = +1
Query: 238 SENHTPYSWDPKPKQTGTKKNNHPRP----QKTRNRSDDKIDQN---GSSKHLHSTNQGS 396
S NH S K + K NNH +P QKTRN + +++D N G ++ LH +G+
Sbjct: 49 SSNHETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDNNKVEGVTEILHVNERGT 108
Query: 397 RGI*KPKHK--PGSTSTQINHASPDQK 471
G K K + Q+ H +P K
Sbjct: 109 LGFHKELKKGVEANNKIQVEHLNPHYK 135
>ref|NP_281728.1| putative integral memnbrane protein [Campylobacter jejuni]
gi|11346959|pir||H81400 probable integral memnbrane
protein Cj0544 [imported] - Campylobacter jejuni (strain
NCTC 11168) gi|6968012|emb|CAB75180.1| putative integral
memnbrane protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
Length = 129
Score = 40.8 bits (94), Expect = 0.025
Identities = 30/98 (30%), Positives = 50/98 (50%), Gaps = 3/98 (3%)
Frame = -2
Query: 416 LGFQMPLLPWFVL*RCLLDPFWSILSSLLFLVF*GLGWLFFFVPVCLGFGSQLYGVWFSD 237
+ +++ L P FVL I++S+LF+VF G G FF+ + + FG+ L G+++ +
Sbjct: 1 MNYKLSLSPLFVL---------EIIASVLFIVFFGFGNFLFFILLSMIFGAVLLGIFWKN 51
Query: 236 PIGSFCFALLVGSLFQ---VLCGLLVFLSVILIVAFGI 132
+ F L L Q V+ G L+ I+ FGI
Sbjct: 52 ML-EFQMGGLKDMLTQFSFVIAGFLLIFPGIITSVFGI 88
>ref|NP_647382.1| ORFID:MW2565~hypothetical protein, similar to autolysin precursor
[Staphylococcus aureus subsp. aureus MW2]
gi|21205738|dbj|BAB96430.1| MW2565 [Staphylococcus
aureus subsp. aureus MW2]
Length = 619
Score = 40.4 bits (93), Expect = 0.032
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Frame = +1
Query: 160 ERNTNKPHNT*NKDPTSSAKQKDPIGSENHTPYSWDPKP----KQTGTKKNNHPRPQKTR 327
+ N N ++ N T S+KQ P S + KP KQ + K P ++
Sbjct: 148 DSNKNSDNSIKNDTDTQSSKQDK--ADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQ 205
Query: 328 NRSDDKIDQNGSSKHLHSTNQGSRGI*KPKHKPGSTSTQINHASPDQKQKELK 486
SDDK +Q SSK S + + ++ + TQ ++AS +K K K
Sbjct: 206 PASDDKANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKNEK 258
>ref|NP_373168.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15928230|ref|NP_375763.1| hypothetical protein,
similar to autolysin precursor [Staphylococcus aureus
subsp. aureus N315] gi|25506904|pir||D90072 hypothetical
protein SA2437 [imported] - Staphylococcus aureus
(strain N315) gi|13702602|dbj|BAB43742.1| SA2437
[Staphylococcus aureus subsp. aureus N315]
gi|14248419|dbj|BAB58806.1| hypothetical protein
[Staphylococcus aureus subsp. aureus Mu50]
Length = 619
Score = 40.4 bits (93), Expect = 0.032
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Frame = +1
Query: 160 ERNTNKPHNT*NKDPTSSAKQKDPIGSENHTPYSWDPKP----KQTGTKKNNHPRPQKTR 327
+ N N ++ N T S+KQ P S + KP KQ + K P ++
Sbjct: 148 DSNKNSDNSIKNDTDTQSSKQDK--ADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQ 205
Query: 328 NRSDDKIDQNGSSKHLHSTNQGSRGI*KPKHKPGSTSTQINHASPDQKQKELK 486
SDDK +Q SSK S + + ++ + TQ ++AS +K K K
Sbjct: 206 PASDDKANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKNEK 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 777,271,463
Number of Sequences: 1393205
Number of extensions: 19109642
Number of successful extensions: 72761
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 60290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70766
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
