Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016071A_C01 KMC016071A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191783.1| putative zinc-finger protein; protein id: At3g6... 62 7e-09
ref|NP_566094.1| unknown protein; protein id: At2g47090.1 [Arabi... 50 2e-05
pir||T02178 hypothetical protein At2g47090 [imported] - Arabidop... 50 2e-05
gb|AAL09796.1| At2g47090/F14M4.8 [Arabidopsis thaliana] gi|20334... 47 1e-04
dbj|BAA82603.1| sALK-3 [Ephydatia fluviatilis] 37 0.24
>ref|NP_191783.1| putative zinc-finger protein; protein id: At3g62240.1 [Arabidopsis
thaliana] gi|11282338|pir||T48016 probable zinc-finger
protein - Arabidopsis thaliana
gi|6899934|emb|CAB71884.1| putative zinc-finger protein
[Arabidopsis thaliana] gi|28058808|gb|AAO29956.1|
putative zinc-finger protein [Arabidopsis thaliana]
Length = 812
Score = 61.6 bits (148), Expect = 7e-09
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = -2
Query: 536 GGNKQRKKSSKFLRVRLGDGSASTLHE--NQHTETGPGTTDNLEENRNGTGGGLPVRGVW 363
G +QRKK+SKF RVRLGDGS + L + N E+ + D+ + GGLPVRGVW
Sbjct: 744 GSKQQRKKTSKFHRVRLGDGSMAALLDLNNSTRESEQESKDSNSNSNQNQTGGLPVRGVW 803
Query: 362 RTGGVHKLFS 333
R GG + LFS
Sbjct: 804 RKGGAN-LFS 812
>ref|NP_566094.1| unknown protein; protein id: At2g47090.1 [Arabidopsis thaliana]
gi|20197141|gb|AAC34219.2| unknown protein [Arabidopsis
thaliana]
Length = 745
Score = 50.1 bits (118), Expect = 2e-05
Identities = 32/87 (36%), Positives = 48/87 (54%), Gaps = 4/87 (4%)
Frame = -2
Query: 584 RTSNASLSNQNREDGGGGN--KQRKKSSKFLRVRLGDGSASTLHE--NQHTETGPGTTDN 417
+T +L N + G G+ KQ KK+SKFLR RLG+ S + + + N + E P ++
Sbjct: 659 KTKVTTLVNSSSAGVGLGDTGKQPKKTSKFLRTRLGEKSMAAVLDLRNSNPEPEPEPKND 718
Query: 416 LEENRNGTGGGLPVRGVWRTGGVHKLF 336
+ + GGLP+RG W+ G KLF
Sbjct: 719 NSKRSQNSPGGLPLRGAWKRGSA-KLF 744
>pir||T02178 hypothetical protein At2g47090 [imported] - Arabidopsis thaliana
Length = 737
Score = 50.1 bits (118), Expect = 2e-05
Identities = 32/87 (36%), Positives = 48/87 (54%), Gaps = 4/87 (4%)
Frame = -2
Query: 584 RTSNASLSNQNREDGGGGN--KQRKKSSKFLRVRLGDGSASTLHE--NQHTETGPGTTDN 417
+T +L N + G G+ KQ KK+SKFLR RLG+ S + + + N + E P ++
Sbjct: 651 KTKVTTLVNSSSAGVGLGDTGKQPKKTSKFLRTRLGEKSMAAVLDLRNSNPEPEPEPKND 710
Query: 416 LEENRNGTGGGLPVRGVWRTGGVHKLF 336
+ + GGLP+RG W+ G KLF
Sbjct: 711 NSKRSQNSPGGLPLRGAWKRGSA-KLF 736
>gb|AAL09796.1| At2g47090/F14M4.8 [Arabidopsis thaliana] gi|20334760|gb|AAM16241.1|
At2g47090/F14M4.8 [Arabidopsis thaliana]
Length = 194
Score = 47.4 bits (111), Expect = 1e-04
Identities = 31/87 (35%), Positives = 47/87 (53%), Gaps = 4/87 (4%)
Frame = -2
Query: 584 RTSNASLSNQNREDGGGGN--KQRKKSSKFLRVRLGDGSASTLHE--NQHTETGPGTTDN 417
+T +L N + G G+ KQ KK+SKFL RLG+ S + + + N + E P ++
Sbjct: 108 KTKVTTLVNSSSAGVGLGDTGKQPKKTSKFLGTRLGEKSMAAVLDLRNSNPEPEPEPKND 167
Query: 416 LEENRNGTGGGLPVRGVWRTGGVHKLF 336
+ + GGLP+RG W+ G KLF
Sbjct: 168 NSKRSQNSPGGLPLRGAWKRGSA-KLF 193
>dbj|BAA82603.1| sALK-3 [Ephydatia fluviatilis]
Length = 523
Score = 36.6 bits (83), Expect = 0.24
Identities = 44/172 (25%), Positives = 69/172 (39%), Gaps = 7/172 (4%)
Frame = +3
Query: 18 TERYWIL*IVHWTGTTVSY*HFIKYTSKRTK*AHSGNGLASNMTTKLISLIAILEIQLKS 197
T RY + + H+ G TV+ K+ S+ + + S + + +++ + + S
Sbjct: 230 TGRYGQVFVGHYQGETVAV---KKFASRDEQSWVRETEIYSIVLLRHENILGYIASDMVS 286
Query: 198 DS----MDIITLKS*NRILYDYTSSTMVHACQFTCICYFTFQSS---GEAELGEELVNTP 356
+S + +IT N LYDY S Q C C S G L EL T
Sbjct: 287 NSGVTELWLITQYHSNGSLYDYLSYN-----QIDCACMVQLMLSICNGLTHLHTELFGTQ 341
Query: 357 GSPNTSHRQPSSSAIPVLF*IVCCSRTCFGVLVFMKGRSRTITQAHSQELGT 512
G P +HR S I V + CC FG+ V + T+ + + GT
Sbjct: 342 GKPAIAHRDMKSRNILVKANLTCCIAD-FGLAVMKVRQKNTMNLPTNPKQGT 392
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,957,101
Number of Sequences: 1393205
Number of extensions: 12194874
Number of successful extensions: 37932
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 35482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37825
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
