Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016066A_C01 KMC016066A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P56724|RLA3_ORYSA 60S ACIDIC RIBOSOMAL PROTEIN P3 (P1/P2-LIKE) 133 2e-30
ref|NP_200539.1| 60S acidic ribosomal protein P3; protein id: At... 132 4e-30
dbj|BAA92988.1| unnamed protein product [Oryza sativa (japonica ... 132 5e-30
ref|NP_194319.1| putative acidic ribosomal protein; protein id: ... 131 8e-30
sp|O24413|RLA3_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P3 (P1/P2-LIKE... 127 9e-29
>sp|P56724|RLA3_ORYSA 60S ACIDIC RIBOSOMAL PROTEIN P3 (P1/P2-LIKE)
Length = 119
Score = 133 bits (334), Expect = 2e-30
Identities = 71/119 (59%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Frame = +1
Query: 43 MGVFTFVLRNSGGDWFAKQHSGDIEASADSTFALQRKLIQAALAVDSSGGVQSSYSPVSP 222
MGVF+FV ++ GG+W AKQH GD+EASA ST+ LQR ++Q AL+ DSSGGVQSS+S VSP
Sbjct: 1 MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRNVVQTALSADSSGGVQSSFSLVSP 60
Query: 223 TSAVFQVIVGGAAVVA-RVGGAAAAGGAAPAEAAPAAEKKKEEKVEESDEEDYGGLSLF 396
TSAVF V++GG GG AAAGG EAA AA K++E+K EES+EE+ G LF
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAA-AATKEEEKKKEESEEEEDFGFDLF 118
>ref|NP_200539.1| 60S acidic ribosomal protein P3; protein id: At5g57290.1, supported
by cDNA: 8695. [Arabidopsis thaliana]
gi|8777362|dbj|BAA96952.1| 60S acidic ribosomal protein
P3 [Arabidopsis thaliana] gi|21617903|gb|AAM66953.1| 60S
acidic ribosomal protein P3 [Arabidopsis thaliana]
Length = 120
Score = 132 bits (332), Expect = 4e-30
Identities = 70/112 (62%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Frame = +1
Query: 43 MGVFTFVLRNSGGDWFAKQHSGDIEASADSTFALQRKLIQAALAVDSSGGVQSSYSPVSP 222
MGVF+FV ++ GG+W AKQH GD+EASA ST+ LQRKL+Q AL+ DSSGGVQSS+S VSP
Sbjct: 1 MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60
Query: 223 TSAVFQVIVGGAAVVA-RVGGAAAAGGAAPAEAAPAAEKKKEEKVEESDEED 375
TSAVF V++GG GG AAAGG EAA AA K++E+K EES+EE+
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAA-AATKEEEKKKEESEEEE 111
>dbj|BAA92988.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 200
Score = 132 bits (331), Expect = 5e-30
Identities = 74/127 (58%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
Frame = +1
Query: 25 QRRREAMGVFTFVLRNSGGDWFAKQHSGDIEASADSTFALQRKLIQAALAVDSSGGVQSS 204
+RRR MGV+TFV R+SG +W AKQ G++EASA + + LQR+L+ AA A DS+ GVQSS
Sbjct: 76 RRRRRVMGVYTFVCRSSGEEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSS 135
Query: 205 YSPVSPTSAVFQVIVGGAAVVARVGGAAAAGGAA--PAEAAPAAEKKKEEKVEESDEEDY 378
++ VSP+SAVFQVI+G A +GGAAA G AA A AP AE+KKEE+ EES ED
Sbjct: 136 FAMVSPSSAVFQVIIGAVGGGAAIGGAAAGGAAAGGAAAEAPKAEEKKEEEKEES--EDD 193
Query: 379 GGLSLFD 399
G SLFD
Sbjct: 194 LGFSLFD 200
>ref|NP_194319.1| putative acidic ribosomal protein; protein id: At4g25890.1,
supported by cDNA: gi_17979038, supported by cDNA:
gi_20259602 [Arabidopsis thaliana]
gi|7484789|pir||T04243 acidic ribosomal protein P3a
homolog F14M19.170 - Arabidopsis thaliana
gi|4539307|emb|CAB39610.1| putative acidic ribosomal
protein [Arabidopsis thaliana]
gi|7269440|emb|CAB79444.1| putative acidic ribosomal
protein [Arabidopsis thaliana]
gi|17979039|gb|AAL49787.1| putative acidic ribosomal
protein [Arabidopsis thaliana]
gi|20259603|gb|AAM14158.1| putative acidic ribosomal
protein [Arabidopsis thaliana]
Length = 119
Score = 131 bits (329), Expect = 8e-30
Identities = 69/111 (62%), Positives = 83/111 (74%)
Frame = +1
Query: 43 MGVFTFVLRNSGGDWFAKQHSGDIEASADSTFALQRKLIQAALAVDSSGGVQSSYSPVSP 222
MGVFTFV +N GG W AKQH G++E+SA ST+ LQRKL+Q +L+ DSSGGVQSS+S VSP
Sbjct: 1 MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60
Query: 223 TSAVFQVIVGGAAVVARVGGAAAAGGAAPAEAAPAAEKKKEEKVEESDEED 375
TSAVFQVIVGG G AA+ G EAA AA K+ E+K EES+EE+
Sbjct: 61 TSAVFQVIVGGGGGGGFSAGGAASSGGGAGEAA-AAPKEDEKKKEESEEEE 110
>sp|O24413|RLA3_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P3 (P1/P2-LIKE) (P3A)
gi|7489709|pir||T02037 acidic ribosomal protein P3a -
maize gi|2431767|gb|AAB71078.1| acidic ribosomal protein
P3a [Zea mays]
Length = 120
Score = 127 bits (320), Expect = 9e-29
Identities = 73/123 (59%), Positives = 89/123 (72%), Gaps = 4/123 (3%)
Frame = +1
Query: 43 MGVFTFVLRNSGGDWFAKQHSGDIEASADSTFALQRKLIQAALAVDSSGGVQSSYSPVSP 222
MGV+TFV RN+GG+W AKQHSG+IEASA + + LQR+L+ AA A DS GVQSS+S V+P
Sbjct: 1 MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60
Query: 223 TSAVFQVIV----GGAAVVARVGGAAAAGGAAPAEAAPAAEKKKEEKVEESDEEDYGGLS 390
+SAVFQVIV GGA +V+ GG AA A AP EKK+EEK EESD++ G S
Sbjct: 61 SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEK-EESDDD--MGFS 117
Query: 391 LFD 399
LFD
Sbjct: 118 LFD 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,823,892
Number of Sequences: 1393205
Number of extensions: 13331595
Number of successful extensions: 172003
Number of sequences better than 10.0: 1686
Number of HSP's better than 10.0 without gapping: 89290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148132
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
