Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016063A_C01 KMC016063A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52072 hypothetical protein g5bf [imported] - Arabidopsis t... 318 3e-86
ref|NP_172405.1| putative RNA-binding protein; protein id: At1g0... 318 3e-86
pir||T51863 probable RNA binding protein [imported] - Arabidopsi... 318 3e-86
gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana] 317 7e-86
gb|AAL32648.1| g5bf protein [Arabidopsis thaliana] 317 1e-85
>pir||T52072 hypothetical protein g5bf [imported] - Arabidopsis thaliana
gi|2765081|emb|CAA71589.1| g5bf [Arabidopsis thaliana]
Length = 378
Score = 318 bits (816), Expect = 3e-86
Identities = 145/172 (84%), Positives = 163/172 (94%)
Frame = -2
Query: 684 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATVFVQVLGND 505
TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQI+QLGHVKDLAT F+ VLGN+
Sbjct: 205 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNE 264
Query: 504 KASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKPFPFRDQHFFA 325
KAS+++FNI+G+KYVTFDGLA+ACAKAGGFPEPEI+HYNPK+FDFGKKK FPFRDQHFFA
Sbjct: 265 KASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFA 324
Query: 324 SVDKAKSVLGWEPEFGLVEGLADSYNLDFGRGTFRKEADFSTDDIILGRVLL 169
SV+KAK VLGW+PEF LVEGL DSYNLDFGRGTFRKEADF+TDD+IL + L+
Sbjct: 325 SVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376
>ref|NP_172405.1| putative RNA-binding protein; protein id: At1g09340.1, supported by
cDNA: 37028., supported by cDNA: gi_13358232, supported
by cDNA: gi_14334753, supported by cDNA: gi_16226246,
supported by cDNA: gi_17064987, supported by cDNA:
gi_17979098 [Arabidopsis thaliana]
gi|25402537|pir||E86226 hypothetical protein [imported]
- Arabidopsis thaliana gi|4337177|gb|AAD18098.1|
Identical to gb|Y10557 g5bf gene from Arabidopsis
thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
gb|T22425, gb|N64934 and gb|T46767 come from this gene
gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
[Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
[Arabidopsis thaliana] gi|17979099|gb|AAL47493.1|
putative RNA-binding protein [Arabidopsis thaliana]
Length = 378
Score = 318 bits (816), Expect = 3e-86
Identities = 145/172 (84%), Positives = 163/172 (94%)
Frame = -2
Query: 684 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATVFVQVLGND 505
TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQI+QLGHVKDLAT F+ VLGN+
Sbjct: 205 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNE 264
Query: 504 KASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKPFPFRDQHFFA 325
KAS+++FNI+G+KYVTFDGLA+ACAKAGGFPEPEI+HYNPK+FDFGKKK FPFRDQHFFA
Sbjct: 265 KASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFA 324
Query: 324 SVDKAKSVLGWEPEFGLVEGLADSYNLDFGRGTFRKEADFSTDDIILGRVLL 169
SV+KAK VLGW+PEF LVEGL DSYNLDFGRGTFRKEADF+TDD+IL + L+
Sbjct: 325 SVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376
>pir||T51863 probable RNA binding protein [imported] - Arabidopsis thaliana
gi|3850621|emb|CAA75602.1| putative RNA binding protein
[Arabidopsis thaliana]
Length = 374
Score = 318 bits (816), Expect = 3e-86
Identities = 145/172 (84%), Positives = 163/172 (94%)
Frame = -2
Query: 684 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATVFVQVLGND 505
TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQI+QLGHVKDLAT F+ VLGN+
Sbjct: 201 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNE 260
Query: 504 KASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKPFPFRDQHFFA 325
KAS+++FNI+G+KYVTFDGLA+ACAKAGGFPEPEI+HYNPK+FDFGKKK FPFRDQHFFA
Sbjct: 261 KASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFA 320
Query: 324 SVDKAKSVLGWEPEFGLVEGLADSYNLDFGRGTFRKEADFSTDDIILGRVLL 169
SV+KAK VLGW+PEF LVEGL DSYNLDFGRGTFRKEADF+TDD+IL + L+
Sbjct: 321 SVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 372
>gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 378
Score = 317 bits (813), Expect = 7e-86
Identities = 145/172 (84%), Positives = 162/172 (93%)
Frame = -2
Query: 684 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATVFVQVLGND 505
TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQI+QLGHVKDLAT F+ VLGN+
Sbjct: 205 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNE 264
Query: 504 KASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKPFPFRDQHFFA 325
KAS+++FNI+G+KYVTFDGLA ACAKAGGFPEPEI+HYNPK+FDFGKKK FPFRDQHFFA
Sbjct: 265 KASREIFNISGEKYVTFDGLAXACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFA 324
Query: 324 SVDKAKSVLGWEPEFGLVEGLADSYNLDFGRGTFRKEADFSTDDIILGRVLL 169
SV+KAK VLGW+PEF LVEGL DSYNLDFGRGTFRKEADF+TDD+IL + L+
Sbjct: 325 SVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376
>gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]
Length = 378
Score = 317 bits (812), Expect = 1e-85
Identities = 144/172 (83%), Positives = 163/172 (94%)
Frame = -2
Query: 684 TSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATVFVQVLGND 505
TSIRPVYIYGPLNYNPVE+WFFHRLKAGRPIP+P SGIQI+QLGHVKDLAT F+ VLGN+
Sbjct: 205 TSIRPVYIYGPLNYNPVEKWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNE 264
Query: 504 KASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKPFPFRDQHFFA 325
KAS+++FNI+G+KYVTFDGLA+ACAKAGGFPEPEI+HYNPK+FDFGKKK FPFRDQHFFA
Sbjct: 265 KASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFA 324
Query: 324 SVDKAKSVLGWEPEFGLVEGLADSYNLDFGRGTFRKEADFSTDDIILGRVLL 169
SV+KAK VLGW+PEF LVEGL DSYNLDFGRGTFRKEADF+TDD+IL + L+
Sbjct: 325 SVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,306,764
Number of Sequences: 1393205
Number of extensions: 13244925
Number of successful extensions: 31555
Number of sequences better than 10.0: 285
Number of HSP's better than 10.0 without gapping: 30371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31411
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
