Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016062A_C01 KMC016062A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86150 hypothetical protein T1N6.27 [imported] - Arabidopsi... 98 7e-20
ref|NP_171690.1| dimethyladenosine transferase, putative; protei... 98 7e-20
ref|NP_487269.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nosto... 48 9e-05
ref|NP_225253.1| Dimethyladenosine Transferase [Chlamydophila pn... 47 2e-04
ref|NP_636182.1| dimethyladenosine transferase [Xanthomonas camp... 46 3e-04
>pir||D86150 hypothetical protein T1N6.27 [imported] - Arabidopsis thaliana
gi|8671851|gb|AAF78414.1|AC009273_20 Identical to
dimethyladenosine transferase from Arabidopsis thaliana
gb|AF051326. It contains ribosomal RNA adenine
dimethylases PF|00398. This gene is cut off
Length = 87
Score = 97.8 bits (242), Expect = 7e-20
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = -2
Query: 543 SSSKSFFSMVNSGFNEKRKMLRKSLQHICTSLEIEEALKSLGLQPTSRPEELTLDDFVKL 364
SS+K+FFS+VNS FN KRKMLRKSLQHI +S +IE+AL GL TSRPEELTLDDFVKL
Sbjct: 21 SSTKNFFSLVNSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKL 80
Query: 363 HNLISKE 343
HN+I++E
Sbjct: 81 HNVIARE 87
>ref|NP_171690.1| dimethyladenosine transferase, putative; protein id: At1g01860.1
[Arabidopsis thaliana] gi|11357249|pir||T51591
dimethyladenosine transferase (EC 2.1.1.-) PFC1
[validated] - Arabidopsis thaliana
gi|3005590|gb|AAC09322.1| dimethyladenosine transferase
[Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1|
putative dimethyladenosine transferase [Arabidopsis
thaliana] gi|28827572|gb|AAO50630.1| putative
dimethyladenosine transferase [Arabidopsis thaliana]
Length = 343
Score = 97.8 bits (242), Expect = 7e-20
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = -2
Query: 543 SSSKSFFSMVNSGFNEKRKMLRKSLQHICTSLEIEEALKSLGLQPTSRPEELTLDDFVKL 364
SS+K+FFS+VNS FN KRKMLRKSLQHI +S +IE+AL GL TSRPEELTLDDFVKL
Sbjct: 277 SSTKNFFSLVNSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLDDFVKL 336
Query: 363 HNLISKE 343
HN+I++E
Sbjct: 337 HNVIARE 343
>ref|NP_487269.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC 7120]
gi|27151584|sp|Q8YS62|KSGA_ANASP Dimethyladenosine
transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
gi|25286083|pir||AF2209 rRNA
(adenine-N6,N6)-dimethyltransferase [imported] - Nostoc
sp. (strain PCC 7120) gi|17132324|dbj|BAB74928.1| rRNA
(adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC
7120]
Length = 271
Score = 47.8 bits (112), Expect = 9e-05
Identities = 23/64 (35%), Positives = 37/64 (56%)
Frame = -2
Query: 534 KSFFSMVNSGFNEKRKMLRKSLQHICTSLEIEEALKSLGLQPTSRPEELTLDDFVKLHNL 355
K ++V GF KRKMLR +LQ + + + L+ L + P +R E+++ +VKL NL
Sbjct: 208 KRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQLLEQLNINPQARAEDISTQQWVKLANL 267
Query: 354 ISKE 343
+ E
Sbjct: 268 LGVE 271
>ref|NP_225253.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029]
gi|15836590|ref|NP_301114.1| dimethyladenosine
transferase [Chlamydophila pneumoniae J138]
gi|16753057|ref|NP_445330.1| dimethyladenosine
transferase [Chlamydophila pneumoniae AR39]
gi|27151618|sp|Q9Z6K0|KSGA_CHLPN Dimethyladenosine
transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
gi|7433484|pir||H72001 dimethyladenosine transferase
CP0791 [imported] - Chlamydophila pneumoniae (strains
CWL029 and AR39) gi|25286066|pir||H86622
dimethyladenosine transferase [imported] - Chlamydophila
pneumoniae (strain J138) gi|4377394|gb|AAD19196.1|
Dimethyladenosine Transferase [Chlamydophila pneumoniae
CWL029] gi|7189706|gb|AAF38590.1| dimethyladenosine
transferase [Chlamydophila pneumoniae AR39]
gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase
[Chlamydophila pneumoniae J138]
Length = 277
Score = 47.0 bits (110), Expect = 2e-04
Identities = 21/55 (38%), Positives = 37/55 (67%)
Frame = -2
Query: 528 FFSMVNSGFNEKRKMLRKSLQHICTSLEIEEALKSLGLQPTSRPEELTLDDFVKL 364
FF++ + F ++RK+L +L+ + ++E+ALK LGL RPE L+L+D++ L
Sbjct: 216 FFTLTRTAFQQRRKVLANTLKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLAL 270
>ref|NP_636182.1| dimethyladenosine transferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|27151570|sp|Q8PCE3|KSGA_XANCP Dimethyladenosine
transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
gi|21111810|gb|AAM40106.1| dimethyladenosine transferase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 262
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/60 (36%), Positives = 36/60 (59%)
Frame = -2
Query: 534 KSFFSMVNSGFNEKRKMLRKSLQHICTSLEIEEALKSLGLQPTSRPEELTLDDFVKLHNL 355
K F +V +GF ++RK LR +L +C E A G++P +R E+L + DF++L N+
Sbjct: 204 KRFADVVRAGFGQRRKTLRNALSTVCEPAHFEAA----GVRPDARAEQLEVADFIRLANV 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,489,907
Number of Sequences: 1393205
Number of extensions: 8232233
Number of successful extensions: 16102
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 15834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16082
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
