Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016058A_C01 KMC016058A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568933.1| putative protein; protein id: At5g61340.1, supp... 82 4e-15
dbj|BAB08489.1| gene_id:MFB13.11~unknown protein [Arabidopsis th... 82 4e-15
dbj|BAC55692.1| P0453E05.2 [Oryza sativa (japonica cultivar-grou... 40 0.022
ref|NP_177102.1| unknown protein; protein id: At1g69430.1 [Arabi... 40 0.022
ref|NP_564252.1| expressed protein; protein id: At1g26650.1, sup... 39 0.038
>ref|NP_568933.1| putative protein; protein id: At5g61340.1, supported by cDNA:
gi_17747105, supported by cDNA: gi_20148746 [Arabidopsis
thaliana] gi|17747106|gb|AAK68745.2| Unknown protein
[Arabidopsis thaliana] gi|20148747|gb|AAM10264.1|
unknown protein [Arabidopsis thaliana]
Length = 326
Score = 82.4 bits (202), Expect = 4e-15
Identities = 43/97 (44%), Positives = 68/97 (69%), Gaps = 3/97 (3%)
Frame = -3
Query: 589 ALPGNLALAAIEALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIIDTIVSCM 410
ALP NL LA +EALFQ+RV+R+Y+N I S +ALEG FIAYLY++ +++DTIV+ +
Sbjct: 224 ALPTNLGLAGVEALFQYRVMRSYYNGDRDIIS---IALEGTFIAYLYALFLVLDTIVNFL 280
Query: 409 FYKSC---NMGSLVDQEDMHFSRIELAEEQNYELGIQ 308
FY+SC + +ED + +I+++E +N ++ I+
Sbjct: 281 FYQSCIKNEEDQNIGREDEYSIKIQISETENTKIHIK 317
>dbj|BAB08489.1| gene_id:MFB13.11~unknown protein [Arabidopsis thaliana]
Length = 359
Score = 82.4 bits (202), Expect = 4e-15
Identities = 43/97 (44%), Positives = 68/97 (69%), Gaps = 3/97 (3%)
Frame = -3
Query: 589 ALPGNLALAAIEALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIIDTIVSCM 410
ALP NL LA +EALFQ+RV+R+Y+N I S +ALEG FIAYLY++ +++DTIV+ +
Sbjct: 257 ALPTNLGLAGVEALFQYRVMRSYYNGDRDIIS---IALEGTFIAYLYALFLVLDTIVNFL 313
Query: 409 FYKSC---NMGSLVDQEDMHFSRIELAEEQNYELGIQ 308
FY+SC + +ED + +I+++E +N ++ I+
Sbjct: 314 FYQSCIKNEEDQNIGREDEYSIKIQISETENTKIHIK 350
>dbj|BAC55692.1| P0453E05.2 [Oryza sativa (japonica cultivar-group)]
gi|29027782|dbj|BAC65918.1| OJ1710_H11.33 [Oryza sativa
(japonica cultivar-group)]
Length = 332
Score = 40.0 bits (92), Expect = 0.022
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -3
Query: 586 LPGNLALAAIEALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIIDTIVSCMF 407
L + LA +E LF+ RV + G+S W EG + +YS ++ID+++S +F
Sbjct: 246 LGSTIGLAFVEGLFEHRVKTLSYGDGSS-RLW-----EGPLLVLMYSFVMLIDSMMSVVF 299
Query: 406 YKSCNMGS--LVDQEDMHFSRIELAEEQN 326
Y +C S ++D E +E+ N
Sbjct: 300 YFTCRSSSMEILDDEGGSIEELEMMVGSN 328
>ref|NP_177102.1| unknown protein; protein id: At1g69430.1 [Arabidopsis thaliana]
gi|12597781|gb|AAG60093.1|AC073178_4 unknown protein
[Arabidopsis thaliana]
Length = 350
Score = 40.0 bits (92), Expect = 0.022
Identities = 25/78 (32%), Positives = 39/78 (49%)
Frame = -3
Query: 586 LPGNLALAAIEALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIIDTIVSCMF 407
L + L +E LF+ RV + G+S W EG + +YS ++IDT++S +F
Sbjct: 268 LGSTIGLTFVEGLFEHRVKSLSYGDGSS-RLW-----EGPLLVVMYSFVVLIDTMMSAVF 321
Query: 406 YKSCNMGSLVDQEDMHFS 353
Y SC S+ E + S
Sbjct: 322 YFSCRSYSMEAVEALEAS 339
>ref|NP_564252.1| expressed protein; protein id: At1g26650.1, supported by cDNA:
gi_14334567, supported by cDNA: gi_17104572 [Arabidopsis
thaliana] gi|14334568|gb|AAK59463.1| unknown protein
[Arabidopsis thaliana] gi|17104573|gb|AAL34175.1|
unknown protein [Arabidopsis thaliana]
Length = 138
Score = 39.3 bits (90), Expect = 0.038
Identities = 23/66 (34%), Positives = 35/66 (52%)
Frame = -3
Query: 586 LPGNLALAAIEALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIIDTIVSCMF 407
L L LA +E LF RV + + G+S W EG + +YS +ID+++S +F
Sbjct: 55 LGSTLGLAFVEGLFDHRVKKVSYGDGSS-RLW-----EGPLLVLMYSFVTLIDSMMSAVF 108
Query: 406 YKSCNM 389
Y SC +
Sbjct: 109 YFSCRV 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,130,457
Number of Sequences: 1393205
Number of extensions: 9062176
Number of successful extensions: 17942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17933
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
