Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016052A_C01 KMC016052A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06796 glycine-rich RNA-binding protein - garden pea gi|177... 194 8e-49
pir||S31443 glycine-rich RNA-binding protein (clone A81) - Arabi... 150 1e-35
ref|NP_193121.1| glycine-rich RNA-binding protein AtGRP2; protei... 150 1e-35
emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana] 149 2e-35
gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum] 145 3e-34
>pir||T06796 glycine-rich RNA-binding protein - garden pea
gi|1778374|gb|AAB71417.1| glycine-rich RNA-binding
protein PsGRBP [Pisum sativum]
Length = 146
Score = 194 bits (492), Expect = 8e-49
Identities = 99/127 (77%), Positives = 110/127 (85%), Gaps = 7/127 (5%)
Frame = -1
Query: 545 APVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFG 366
APV+SMLNY+R MSSSKLFIGGLSYGVDD+SL+DAF+S+G V EARVI DRDTGRSRGFG
Sbjct: 21 APVSSMLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFASYGEVVEARVITDRDTGRSRGFG 80
Query: 365 FVSFDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPRGGGGYGTGGGYGDRNS---- 198
FV+F S+ESA+SALS+MDGQDLNGRNIRVSYANDRP+ PRGGGG G GGGYGD S
Sbjct: 81 FVNFTSDESATSALSAMDGQDLNGRNIRVSYANDRPSAPRGGGG-GYGGGYGDGFSNRGG 139
Query: 197 ---GGGW 186
GGGW
Sbjct: 140 GGGGGGW 146
>pir||S31443 glycine-rich RNA-binding protein (clone A81) - Arabidopsis thaliana
(fragment) gi|829254|emb|CAA49174.1| glycine-rich
RNA-binding protein [Arabidopsis thaliana]
Length = 139
Score = 150 bits (378), Expect = 1e-35
Identities = 79/123 (64%), Positives = 98/123 (79%), Gaps = 4/123 (3%)
Frame = -1
Query: 542 PVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGF 363
PV SML +R MS+ KLFIGGLS+G DD SL DAF+ FG V +A+VIVDR+TGRSRGFGF
Sbjct: 3 PVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 61
Query: 362 VSFDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPR---GGGGY-GTGGGYGDRNSG 195
V+F+ E +A++A+S MDG++LNGR+IRV+ ANDRP+ PR GGGGY G GGGYG G
Sbjct: 62 VNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGGGGYG--GGG 119
Query: 194 GGW 186
GG+
Sbjct: 120 GGY 122
>ref|NP_193121.1| glycine-rich RNA-binding protein AtGRP2; protein id: At4g13850.1,
supported by cDNA: 16314., supported by cDNA:
gi_18252852 [Arabidopsis thaliana]
gi|25090505|sp|Q9SVM8|GRP2_ARATH Glycine-rich
RNA-binding protein 2, mitochondrial precursor (AtGRP2)
gi|7439991|pir||T05254 probable RNA-binding protein
F18A5.240 - Arabidopsis thaliana
gi|4455314|emb|CAB36849.1| glycine-rich RNA-binding
protein AtGRP2-like [Arabidopsis thaliana]
gi|7268089|emb|CAB78427.1| glycine-rich RNA-binding
protein AtGRP2-like [Arabidopsis thaliana]
gi|18252853|gb|AAL62353.1| glycine-rich RNA-binding
protein AtGRP2 - like [Arabidopsis thaliana]
gi|21553749|gb|AAM62842.1| glycine-rich RNA-binding
protein AtGRP2-like [Arabidopsis thaliana]
gi|25084267|gb|AAN72208.1| glycine-rich RNA-binding
protein AtGRP2 - like [Arabidopsis thaliana]
Length = 158
Score = 150 bits (378), Expect = 1e-35
Identities = 79/123 (64%), Positives = 98/123 (79%), Gaps = 4/123 (3%)
Frame = -1
Query: 542 PVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGF 363
PV SML +R MS+ KLFIGGLS+G DD SL DAF+ FG V +A+VIVDR+TGRSRGFGF
Sbjct: 22 PVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 80
Query: 362 VSFDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPR---GGGGY-GTGGGYGDRNSG 195
V+F+ E +A++A+S MDG++LNGR+IRV+ ANDRP+ PR GGGGY G GGGYG G
Sbjct: 81 VNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGGGGYG--GGG 138
Query: 194 GGW 186
GG+
Sbjct: 139 GGY 141
>emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana]
Length = 150
Score = 149 bits (376), Expect = 2e-35
Identities = 76/122 (62%), Positives = 95/122 (77%), Gaps = 3/122 (2%)
Frame = -1
Query: 542 PVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGF 363
PV SML +R MS+ KLFIGGLS+G DD SL DAF+ FG V +A+VIVDR+TGRSRGFGF
Sbjct: 22 PVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 80
Query: 362 VSFDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPR---GGGGYGTGGGYGDRNSGG 192
V+F+ E +A++A+S MDG++LNGR+IRV+ ANDRP+ PR GGGGY GGG G GG
Sbjct: 81 VNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGGGGGYGGGGG 140
Query: 191 GW 186
+
Sbjct: 141 SY 142
>gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 145 bits (366), Expect = 3e-34
Identities = 74/128 (57%), Positives = 94/128 (72%), Gaps = 6/128 (4%)
Frame = -1
Query: 536 ASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGFVS 357
AS+ IR MSSSKLF+GGLSYG D+ SL++AFS +G V EARVI+DRDTGRSRGFGF+S
Sbjct: 28 ASLFQAIRSMSSSKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFIS 87
Query: 356 FDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPRGGGGYGTGGGY------GDRNSG 195
F S E A+SAL +MDGQDL+GR IRV+YA ++ GGG G GGG+ G+
Sbjct: 88 FPSSEEAASALQAMDGQDLHGRRIRVNYATEKRRAGFGGGYGGGGGGFNYGGEGGNSAGA 147
Query: 194 GGW*SNHF 171
GG+ +N++
Sbjct: 148 GGYPTNNY 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,332,303
Number of Sequences: 1393205
Number of extensions: 11737560
Number of successful extensions: 155008
Number of sequences better than 10.0: 3634
Number of HSP's better than 10.0 without gapping: 64127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120799
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
