Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016050A_C01 KMC016050A_c01
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190544.1| leucine rich repeat protein family; protein id:... 188 7e-47
gb|AAM62916.1| unknown [Arabidopsis thaliana] 186 3e-46
ref|NP_201384.1| leucine rich repeat protein family; protein id:... 184 1e-45
pir||T05887 hypothetical protein F6H11.60 - Arabidopsis thaliana... 183 3e-45
emb|CAB51480.1| putative protein serine /threonine kinase [Sorgh... 81 2e-14
>ref|NP_190544.1| leucine rich repeat protein family; protein id: At3g49750.1
[Arabidopsis thaliana] gi|11358042|pir||T46041
hypothetical protein T16K5.100 - Arabidopsis thaliana
gi|6723420|emb|CAB66913.1| putative protein [Arabidopsis
thaliana]
Length = 274
Score = 188 bits (478), Expect = 7e-47
Identities = 93/149 (62%), Positives = 115/149 (76%), Gaps = 2/149 (1%)
Frame = +1
Query: 361 LVLLLLCVMWIQIQLCSSDPSDEACLTQLSKSLQDP--NRLNWKQENFAKPCNDSTSNLQ 534
L+LLLL + +L ++DP+DEACL L ++L+DP N NW F+ PC+ TS L
Sbjct: 7 LLLLLLLIFQTAQRLTTADPNDEACLKNLRQNLEDPASNLRNWTNSVFSNPCSGFTSYLP 66
Query: 535 GAICNNGRIYKLSLNNLALHGTISPFLANCTNLQALDLSSNFLTGPIPPDLQSLVNLAVL 714
GA CNNGRIYKLSL NL+L G+ISPFL+NCTNLQ+LDLSSN ++G IPP++Q LVNLAVL
Sbjct: 67 GATCNNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGVIPPEIQYLVNLAVL 126
Query: 715 NLSANRLEGEIPPQLTMCAYLNIIDLHQN 801
NLS+N L GEI PQL +CAYLN+IDLH N
Sbjct: 127 NLSSNHLSGEITPQLALCAYLNVIDLHDN 155
>gb|AAM62916.1| unknown [Arabidopsis thaliana]
Length = 279
Score = 186 bits (473), Expect = 3e-46
Identities = 93/152 (61%), Positives = 116/152 (76%), Gaps = 2/152 (1%)
Frame = +1
Query: 352 RVVLVLLLLCVMWIQIQLCSSDPSDEACLTQLSKSLQDP--NRLNWKQENFAKPCNDSTS 525
R++ ++ LL Q +L + DP+DEACLT L +SL+DP N NW + F PC+ +S
Sbjct: 12 RLLFLIFLLSFETAQ-RLVTGDPNDEACLTNLRRSLEDPANNLRNWTKSFFINPCSGFSS 70
Query: 526 NLQGAICNNGRIYKLSLNNLALHGTISPFLANCTNLQALDLSSNFLTGPIPPDLQSLVNL 705
L G ICNNGRIYKLSL NL+L G+ISPFL+NCTNLQ+LDLSSN ++G IPP LQ LVNL
Sbjct: 71 YLHGVICNNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGEIPPQLQFLVNL 130
Query: 706 AVLNLSANRLEGEIPPQLTMCAYLNIIDLHQN 801
AVLNLS+NRL G+I PQ+ +CAYLN+IDLH N
Sbjct: 131 AVLNLSSNRLSGQISPQIALCAYLNVIDLHDN 162
>ref|NP_201384.1| leucine rich repeat protein family; protein id: At5g65830.1,
supported by cDNA: 17160. [Arabidopsis thaliana]
gi|9758570|dbj|BAB09051.1| contains similarity to
receptor protein kinase-like protein~gene_id:K22J17.4
[Arabidopsis thaliana]
Length = 279
Score = 184 bits (468), Expect = 1e-45
Identities = 92/152 (60%), Positives = 115/152 (75%), Gaps = 2/152 (1%)
Frame = +1
Query: 352 RVVLVLLLLCVMWIQIQLCSSDPSDEACLTQLSKSLQDP--NRLNWKQENFAKPCNDSTS 525
R++ ++ LL Q +L + DP+DEACLT L +SL+DP N NW + F PC+ +S
Sbjct: 12 RLLFLIFLLSFETAQ-RLVTGDPNDEACLTNLRQSLEDPANNLRNWTKSFFINPCSGFSS 70
Query: 526 NLQGAICNNGRIYKLSLNNLALHGTISPFLANCTNLQALDLSSNFLTGPIPPDLQSLVNL 705
L G ICNNGRIYKLSL NL+L G+ISPFL+NCTNLQ+LDLSSN ++G IPP LQ VNL
Sbjct: 71 YLHGVICNNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGEIPPQLQFFVNL 130
Query: 706 AVLNLSANRLEGEIPPQLTMCAYLNIIDLHQN 801
AVLNLS+NRL G+I PQ+ +CAYLN+IDLH N
Sbjct: 131 AVLNLSSNRLSGQISPQIALCAYLNVIDLHDN 162
>pir||T05887 hypothetical protein F6H11.60 - Arabidopsis thaliana
gi|2827704|emb|CAA16677.1| LRR-like protein [Arabidopsis
thaliana]
Length = 445
Score = 183 bits (464), Expect = 3e-45
Identities = 88/136 (64%), Positives = 107/136 (77%), Gaps = 2/136 (1%)
Frame = +1
Query: 400 QLCSSDPSDEACLTQLSKSLQDP--NRLNWKQENFAKPCNDSTSNLQGAICNNGRIYKLS 573
+L + DP+DEACLT L +SL+DP N NW + F PC+ +S L G ICNNGRIYKLS
Sbjct: 193 RLVTGDPNDEACLTNLRQSLEDPANNLRNWTKSFFINPCSGFSSYLHGVICNNGRIYKLS 252
Query: 574 LNNLALHGTISPFLANCTNLQALDLSSNFLTGPIPPDLQSLVNLAVLNLSANRLEGEIPP 753
L NL+L G+ISPFL+NCTNLQ+LDLSSN ++G IPP LQ VNLAVLNLS+NRL G+I P
Sbjct: 253 LTNLSLRGSISPFLSNCTNLQSLDLSSNQISGEIPPQLQFFVNLAVLNLSSNRLSGQISP 312
Query: 754 QLTMCAYLNIIDLHQN 801
Q+ +CAYLN+IDLH N
Sbjct: 313 QIALCAYLNVIDLHDN 328
>emb|CAB51480.1| putative protein serine /threonine kinase [Sorghum bicolor]
Length = 619
Score = 80.9 bits (198), Expect = 2e-14
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Frame = +1
Query: 358 VLVLLLLCVMWIQIQLCSSDPSDEACLTQLSKSLQDPNRL--NWKQENFAKPCNDSTSNL 531
+L +LL + Q LC + S L ++ L D + +WK +N PC N
Sbjct: 10 LLAFVLLMLGCQQSSLCLAVDSQVEALVEMKMQLVDNRGVLSDWK-DNQMSPCYWEYVN- 67
Query: 532 QGAICNNGRIYKLSLNNLALHGTISPFLANCTNLQALDLSSNFLTGPIPPDLQSLVNLAV 711
C + ++ ++L++ L GT+SP +A T LQ L L +N +TG IPP+ +L +L +
Sbjct: 68 ----CQDNKVSTITLSSSGLTGTLSPSIAKLTTLQQLKLDNNNITGGIPPEFGNLSSLTI 123
Query: 712 LNLSANRLEGEIPPQLTMCAYLNIIDLHQN 801
LNL N L G IP L + L I+DL N
Sbjct: 124 LNLGRNNLNGSIPDSLGQLSKLQILDLSHN 153
Score = 54.7 bits (130), Expect = 2e-06
Identities = 33/97 (34%), Positives = 47/97 (48%)
Frame = +1
Query: 511 NDSTSNLQGAICNNGRIYKLSLNNLALHGTISPFLANCTNLQALDLSSNFLTGPIPPDLQ 690
N+ T + N + L+L L+G+I L + LQ LDLS N L+G IP
Sbjct: 105 NNITGGIPPEFGNLSSLTILNLGRNNLNGSIPDSLGQLSKLQILDLSHNHLSGNIPSSFS 164
Query: 691 SLVNLAVLNLSANRLEGEIPPQLTMCAYLNIIDLHQN 801
+ +L +NL+ N + GEIP L A+ N H N
Sbjct: 165 NPPSLNDINLAYNNISGEIPQHLLQAAHYNFTGNHLN 201
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 708,264,442
Number of Sequences: 1393205
Number of extensions: 16293321
Number of successful extensions: 89046
Number of sequences better than 10.0: 1964
Number of HSP's better than 10.0 without gapping: 64796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84187
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
