Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016033A_C01 KMC016033A_c01
(717 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD42725.1| putative rac protein [Nicotiana tabacum] 137 1e-31
ref|NP_566897.1| rac GTP-binding protein (Arac8); protein id: At... 129 4e-29
ref|NP_201093.1| GTP binding protein Arac10; protein id: At5g628... 126 3e-28
gb|AAF43923.1|AF239751_1 Rac-like protein Rop1 [Tradescantia vir... 121 1e-26
dbj|BAA84494.1| small GTP-binding protein OsRac3 [Oryza sativa] 120 2e-26
>emb|CAD42725.1| putative rac protein [Nicotiana tabacum]
Length = 210
Score = 137 bits (345), Expect = 1e-31
Identities = 64/84 (76%), Positives = 75/84 (89%)
Frame = -2
Query: 716 REDKHYLADHPGLVPVTSEQGEELSQPIGATYYIECSSKTQQNVQGIFDAAIRMVIKPPQ 537
REDKH+LADHPGLVPVT+ QGEEL + IGA YYIECSSKTQQNV+ +FDAAI++VIKPPQ
Sbjct: 125 REDKHFLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184
Query: 536 KQQEKRKKPRRGCFLNVLCGRNIV 465
KQ+EK KK RRGC +NV+CGR +V
Sbjct: 185 KQKEK-KKQRRGCLMNVMCGRKLV 207
>ref|NP_566897.1| rac GTP-binding protein (Arac8); protein id: At3g48040.1, supported
by cDNA: gi_3702965 [Arabidopsis thaliana]
gi|11274356|pir||T48860 GTP-binding protein Arac8
[imported] - Arabidopsis thaliana
gi|3702966|gb|AAC63015.1| rac GTP binding protein Arac8
[Arabidopsis thaliana]
gi|7211210|gb|AAF40247.1|AF115475_1 Arac8 [Arabidopsis
thaliana] gi|26449743|dbj|BAC41995.1| putative rac GTP
binding protein Arac8 [Arabidopsis thaliana]
gi|28950737|gb|AAO63292.1| At3g48040 [Arabidopsis
thaliana]
Length = 208
Score = 129 bits (324), Expect = 4e-29
Identities = 60/84 (71%), Positives = 72/84 (85%), Gaps = 2/84 (2%)
Frame = -2
Query: 716 REDKHYLADHPGLVPVTSEQGEELSQPIGATYYIECSSKTQQNVQGIFDAAIRMVIKPPQ 537
RED+HYL+DHPGL PVT+ QGEEL + IGATYYIECSSKTQQNV+ +FDAAI++VIKP
Sbjct: 125 REDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVIKPAV 184
Query: 536 KQQEKRK--KPRRGCFLNVLCGRN 471
KQ+EK+K KPR GC N+LCG+N
Sbjct: 185 KQKEKKKKQKPRSGCLSNILCGKN 208
>ref|NP_201093.1| GTP binding protein Arac10; protein id: At5g62880.1, supported by
cDNA: gi_3702963 [Arabidopsis thaliana]
gi|11274338|pir||T51824 GTP binding protein Arac10
[imported] - Arabidopsis thaliana
gi|3702964|gb|AAC63014.1| rac GTP binding protein Arac10
[Arabidopsis thaliana]
gi|7211193|gb|AAF40238.1|AF115467_1 Arac10 [Arabidopsis
thaliana] gi|10177466|dbj|BAB10857.1| rac GTP binding
protein Arac10 [Arabidopsis thaliana]
gi|27754724|gb|AAO22805.1| putative GTP binding protein
Arac10 [Arabidopsis thaliana] gi|28394091|gb|AAO42453.1|
putative GTP binding protein Arac10 [Arabidopsis
thaliana]
Length = 215
Score = 126 bits (317), Expect = 3e-28
Identities = 62/91 (68%), Positives = 72/91 (78%), Gaps = 5/91 (5%)
Frame = -2
Query: 716 REDKHYLADHPGLVPVTSEQGEELSQPIGATYYIECSSKTQQNVQGIFDAAIRMVIKPPQ 537
REDKHYLADHPGL PVT+ QGEEL + IGATYYIECSSKTQQNV+ +FD+AI+ VIKP
Sbjct: 125 REDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVIKPLV 184
Query: 536 KQQEKRKKPRR-----GCFLNVLCGRNIVRH 459
KQ+EK KK ++ GC NVLCGR + RH
Sbjct: 185 KQKEKTKKKKKQKSNHGCLSNVLCGRIVTRH 215
>gb|AAF43923.1|AF239751_1 Rac-like protein Rop1 [Tradescantia virginiana]
Length = 212
Score = 121 bits (303), Expect = 1e-26
Identities = 54/85 (63%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Frame = -2
Query: 716 REDKHYLADHPGLVPVTSEQGEELSQPIGATYYIECSSKTQQNVQGIFDAAIRMVIKPPQ 537
REDK YLADHPGL+ V++ QGEEL + IGA YY+ECSSKTQQNV+ +FDAAI++VI+PP+
Sbjct: 125 REDKQYLADHPGLMSVSTAQGEELRKQIGAAYYVECSSKTQQNVKAVFDAAIKVVIQPPK 184
Query: 536 KQQEKRKKPRRGC-FLNVLCGRNIV 465
+ +K+K+PR GC LN+ CGR +V
Sbjct: 185 HKDKKKKRPRHGCSILNIFCGRKLV 209
>dbj|BAA84494.1| small GTP-binding protein OsRac3 [Oryza sativa]
Length = 214
Score = 120 bits (301), Expect = 2e-26
Identities = 57/85 (67%), Positives = 72/85 (84%), Gaps = 2/85 (2%)
Frame = -2
Query: 716 REDKHYLADHPGLVPVTSEQGEELSQPIGATYYIECSSKTQQNVQGIFDAAIRMVIKPPQ 537
REDKHYL DHPG++PVT+ QGEEL + IGA YYIECSSKTQQNV+G+FDAAI++VI+PP
Sbjct: 125 REDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVIQPPT 184
Query: 536 KQQE-KRKKPRRGC-FLNVLCGRNI 468
KQ+E K+KK R+GC +N+ GR +
Sbjct: 185 KQREKKKKKSRQGCSMMNMFRGRKM 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,718,154
Number of Sequences: 1393205
Number of extensions: 12641065
Number of successful extensions: 29908
Number of sequences better than 10.0: 385
Number of HSP's better than 10.0 without gapping: 29020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29879
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
