Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016031A_C01 KMC016031A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195600.1| putative protein; protein id: At4g38890.1 [Arab... 96 2e-19
dbj|BAC43063.1| unknown protein [Arabidopsis thaliana] 96 2e-19
ref|NP_659107.1| putative zinc finger protein MA23 [Mus musculus... 72 2e-12
ref|XP_217318.1| similar to putative zinc finger protein MA23 [M... 72 2e-12
ref|NP_610000.1| CG10463-PA [Drosophila melanogaster] gi|7298625... 70 8e-12
>ref|NP_195600.1| putative protein; protein id: At4g38890.1 [Arabidopsis thaliana]
gi|7487839|pir||T06088 hypothetical protein T9A14.170 -
Arabidopsis thaliana gi|4490341|emb|CAB38623.1| putative
protein [Arabidopsis thaliana]
gi|7270872|emb|CAB80552.1| putative protein [Arabidopsis
thaliana]
Length = 700
Score = 95.9 bits (237), Expect = 2e-19
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = -1
Query: 471 FGRDELETVMASESAADWIRISKMLLGKVPDGFTFAPKHKSNAYDRAENG 322
FGRD+LET+M SESA DW+RIS+MLLGKVP+GFTFAPKHKSNAYDRAENG
Sbjct: 651 FGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAENG 700
>dbj|BAC43063.1| unknown protein [Arabidopsis thaliana]
Length = 265
Score = 95.9 bits (237), Expect = 2e-19
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = -1
Query: 471 FGRDELETVMASESAADWIRISKMLLGKVPDGFTFAPKHKSNAYDRAENG 322
FGRD+LET+M SESA DW+RIS+MLLGKVP+GFTFAPKHKSNAYDRAENG
Sbjct: 216 FGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAENG 265
>ref|NP_659107.1| putative zinc finger protein MA23 [Mus musculus]
gi|15192726|gb|AAK84684.1| putative zinc finger protein
[Mus musculus]
Length = 637
Score = 72.4 bits (176), Expect = 2e-12
Identities = 33/43 (76%), Positives = 37/43 (85%)
Frame = -1
Query: 468 GRDELETVMASESAADWIRISKMLLGKVPDGFTFAPKHKSNAY 340
GRD LET+MAS+ AADWIRIS+MLLG VP GF F PKHK+NAY
Sbjct: 594 GRDYLETLMASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 636
>ref|XP_217318.1| similar to putative zinc finger protein MA23 [Mus musculus] [Rattus
norvegicus]
Length = 159
Score = 72.4 bits (176), Expect = 2e-12
Identities = 33/43 (76%), Positives = 37/43 (85%)
Frame = -1
Query: 468 GRDELETVMASESAADWIRISKMLLGKVPDGFTFAPKHKSNAY 340
GRD LET+MAS+ AADWIRIS+MLLG VP GF F PKHK+NAY
Sbjct: 116 GRDYLETLMASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 158
>ref|NP_610000.1| CG10463-PA [Drosophila melanogaster] gi|7298625|gb|AAF53841.1|
CG10463-PA [Drosophila melanogaster]
Length = 604
Score = 70.5 bits (171), Expect = 8e-12
Identities = 28/43 (65%), Positives = 40/43 (92%)
Frame = -1
Query: 468 GRDELETVMASESAADWIRISKMLLGKVPDGFTFAPKHKSNAY 340
GRDE+ET+M+S +AADW+++S+ LLG+VP+GFTF PKHK+NA+
Sbjct: 562 GRDEMETLMSSGNAADWVKLSESLLGRVPEGFTFVPKHKANAF 604
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,649,451
Number of Sequences: 1393205
Number of extensions: 6106062
Number of successful extensions: 13935
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13934
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
