Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016027A_C01 KMC016027A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63923.1| carnitine racemase like protein [Arabidopsis thal... 152 3e-36
ref|NP_193179.1| carnitine racemase like protein; protein id: At... 152 4e-36
ref|NP_193180.1| carnitine racemase like protein; protein id: At... 151 7e-36
ref|NP_176730.1| hypothetical protein; protein id: At1g65520.1 [... 121 8e-27
dbj|BAA92965.1| unnamed protein product [Oryza sativa (japonica ... 114 1e-24
>gb|AAM63923.1| carnitine racemase like protein [Arabidopsis thaliana]
Length = 240
Score = 152 bits (384), Expect = 3e-36
Identities = 76/126 (60%), Positives = 96/126 (75%), Gaps = 1/126 (0%)
Frame = -3
Query: 596 NGHASAAGFLLAISHDYVLMRSDQGVMYMPEVNLGLPLPDYFAAVMRDKIRSPVTLRDFV 417
NGHA+AAG +LA+SHDYV MR D+GV+YM EV++GL +PDYF+A++R KI + R+ +
Sbjct: 105 NGHAAAAGLILALSHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELL 164
Query: 416 LGGVKIRAGEAVKRGIVDS-AHDGAEKTVEAAMRLGEELGRRKWVGEVYAEIRKSLYPEA 240
L G KIR EAV GIVDS A+D E V A++RLGE+L +KW GEVYA IRKSLYPE
Sbjct: 165 LSGKKIRGEEAVGLGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPEL 224
Query: 239 CLVLGL 222
C +LGL
Sbjct: 225 CEILGL 230
>ref|NP_193179.1| carnitine racemase like protein; protein id: At4g14430.1, supported
by cDNA: 28978., supported by cDNA: gi_14190480,
supported by cDNA: gi_15810106 [Arabidopsis thaliana]
gi|7488070|pir||D71406 probable carnitine racemase -
Arabidopsis thaliana gi|2244799|emb|CAB10222.1|
carnitine racemase like protein [Arabidopsis thaliana]
gi|7268149|emb|CAB78485.1| carnitine racemase like
protein [Arabidopsis thaliana]
gi|14190481|gb|AAK55721.1|AF380640_1 AT4g14430/dl3255c
[Arabidopsis thaliana] gi|15810107|gb|AAL06979.1|
AT4g14430/dl3255c [Arabidopsis thaliana]
Length = 240
Score = 152 bits (383), Expect = 4e-36
Identities = 76/126 (60%), Positives = 96/126 (75%), Gaps = 1/126 (0%)
Frame = -3
Query: 596 NGHASAAGFLLAISHDYVLMRSDQGVMYMPEVNLGLPLPDYFAAVMRDKIRSPVTLRDFV 417
NGHA+AAG +LA+SHDYV MR D+GV+YM EV++GL +PDYF+A++R KI + R+ +
Sbjct: 105 NGHAAAAGLILALSHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELL 164
Query: 416 LGGVKIRAGEAVKRGIVDS-AHDGAEKTVEAAMRLGEELGRRKWVGEVYAEIRKSLYPEA 240
L G KIR EAV GIVDS A+D E V A++RLGE+L +KW GEVYA IRKSLYPE
Sbjct: 165 LSGKKIRGEEAVGLGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPEL 224
Query: 239 CLVLGL 222
C +LGL
Sbjct: 225 CGILGL 230
>ref|NP_193180.1| carnitine racemase like protein; protein id: At4g14440.1, supported
by cDNA: gi_18252926 [Arabidopsis thaliana]
gi|7488071|pir||E71406 probable carnitine racemase -
Arabidopsis thaliana gi|2244800|emb|CAB10223.1|
carnitine racemase like protein [Arabidopsis thaliana]
gi|7268150|emb|CAB78486.1| carnitine racemase like
protein [Arabidopsis thaliana]
gi|18252927|gb|AAL62390.1| carnitine racemase like
protein [Arabidopsis thaliana]
Length = 238
Score = 151 bits (381), Expect = 7e-36
Identities = 73/133 (54%), Positives = 98/133 (72%), Gaps = 1/133 (0%)
Frame = -3
Query: 596 NGHASAAGFLLAISHDYVLMRSDQGVMYMPEVNLGLPLPDYFAAVMRDKIRSPVTLRDFV 417
NGHA+A+G + A+SHDYV MR D+GV+YM EV++GLP+PDYF+A++ K+ S + R+ +
Sbjct: 103 NGHAAASGLMFALSHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELL 162
Query: 416 LGGVKIRAGEAVKRGIVDS-AHDGAEKTVEAAMRLGEELGRRKWVGEVYAEIRKSLYPEA 240
L G K++ EAV GIVDS AHD AE VEA + LGE L +KW GEVYA IRKSLYPE
Sbjct: 163 LSGKKLKGEEAVALGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPEL 222
Query: 239 CLVLGLTQKSIVS 201
C ++ LT ++ +
Sbjct: 223 CRMVDLTANNLAT 235
>ref|NP_176730.1| hypothetical protein; protein id: At1g65520.1 [Arabidopsis
thaliana] gi|25404548|pir||A96680 hypothetical protein
F5I14.5 [imported] - Arabidopsis thaliana
gi|2190542|gb|AAB60906.1| F5I14.5 gene product
[Arabidopsis thaliana]
Length = 240
Score = 121 bits (303), Expect = 8e-27
Identities = 63/120 (52%), Positives = 85/120 (70%)
Frame = -3
Query: 593 GHASAAGFLLAISHDYVLMRSDQGVMYMPEVNLGLPLPDYFAAVMRDKIRSPVTLRDFVL 414
GHASAAG +LA+SHDYVLMR D+G +YM E+++ L +P +F AV+R KI SP RD +L
Sbjct: 101 GHASAAGCILAMSHDYVLMRRDRGFLYMSELDIELIVPAWFMAVIRGKIGSPAARRDVML 160
Query: 413 GGVKIRAGEAVKRGIVDSAHDGAEKTVEAAMRLGEELGRRKWVGEVYAEIRKSLYPEACL 234
K+ A VK GIVDSA+ A +TVEAA++LGEE+ +R G VY ++R+SL E +
Sbjct: 161 TAAKVTADVGVKMGIVDSAYGSAAETVEAAIKLGEEIVQRGGDGHVYGKMRESLLREVLI 220
>dbj|BAA92965.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 247
Score = 114 bits (284), Expect = 1e-24
Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Frame = -3
Query: 593 GHASAAGFLLAISHDYVLMRSDQGVMYMPEVNLGLPLPDYFAAVMRDKIRSPVTLRDFVL 414
GHA+AAG LA++HD V+MR+ +G +YM EV+ GL + D+FA ++R K+ V RD VL
Sbjct: 108 GHAAAAGCALALAHDAVVMRASRGFLYMSEVDAGLKIVDFFAELIRQKVPDAVNRRDLVL 167
Query: 413 GGVKIRAGEAVKRGIVDSAHD-GAEKTVEAAMRLGEELGRRKWVGEVYAEIRKSLYPE 243
G K+ A +A++RGIVD+A D G + V AA+R E L R W GE+ AE RK+++PE
Sbjct: 168 RGDKMTAADALRRGIVDAAVDGGVDDVVAAAVREAEALAARGWDGEIVAETRKAIWPE 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,885,468
Number of Sequences: 1393205
Number of extensions: 17470820
Number of successful extensions: 403240
Number of sequences better than 10.0: 9405
Number of HSP's better than 10.0 without gapping: 105115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238679
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
