Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016026A_C01 KMC016026A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P34091|RL6_MESCR 60S RIBOSOMAL PROTEIN L6 (YL16-LIKE) gi|2803... 192 3e-48
emb|CAB76914.1| 60S ribosomal protein L6 [Cicer arietinum] 190 1e-47
gb|AAM65875.1| 60S ribosomal protein L6, putative [Arabidopsis t... 187 1e-46
ref|NP_177546.1| putative 60S ribosomal protein L6; protein id: ... 186 1e-46
ref|NP_173289.1| 60S ribosomal protein L6, putative; protein id:... 186 1e-46
>sp|P34091|RL6_MESCR 60S RIBOSOMAL PROTEIN L6 (YL16-LIKE) gi|280374|pir||S28586
ribosomal protein ML16, cytosolic - common ice plant
gi|19539|emb|CAA49175.1| ribosomal protein YL16
[Mesembryanthemum crystallinum]
Length = 234
Score = 192 bits (488), Expect = 3e-48
Identities = 91/112 (81%), Positives = 103/112 (91%)
Frame = -3
Query: 581 GPYKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEAQKKKKKGEGEFFEAEK 402
GP+K+NGVPLRRVNQ+YVI TSTKVD+S VNV+KFDDKYF K+A+KK KKGEGEFFEAEK
Sbjct: 123 GPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEK 182
Query: 401 EEKNALPQEKKDDQKTVDSSLITAIEGVPELKAYLGARFSLKSGMKPHELLF 246
+E N LPQEKKDDQK VD +L+ AIEGVPELKAYLGARFSLK+GMKPHEL+F
Sbjct: 183 KEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
>emb|CAB76914.1| 60S ribosomal protein L6 [Cicer arietinum]
Length = 233
Score = 190 bits (483), Expect = 1e-47
Identities = 93/112 (83%), Positives = 103/112 (91%)
Frame = -3
Query: 581 GPYKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEAQKKKKKGEGEFFEAEK 402
GP+KINGVPLRRVNQSYVIGTSTKVDVS+VNVDKFDDKYFSK A+KK KGEGEFF++EK
Sbjct: 122 GPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVDKFDDKYFSKVAEKKTTKGEGEFFDSEK 181
Query: 401 EEKNALPQEKKDDQKTVDSSLITAIEGVPELKAYLGARFSLKSGMKPHELLF 246
E+K LPQEKKDDQKTVDSSL+ AIE VP+LK LGARFSLKSG+KPHEL+F
Sbjct: 182 EDKKVLPQEKKDDQKTVDSSLLKAIETVPDLKTNLGARFSLKSGVKPHELVF 233
>gb|AAM65875.1| 60S ribosomal protein L6, putative [Arabidopsis thaliana]
Length = 233
Score = 187 bits (474), Expect = 1e-46
Identities = 89/112 (79%), Positives = 100/112 (88%)
Frame = -3
Query: 581 GPYKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEAQKKKKKGEGEFFEAEK 402
GP+KINGVPLRRVNQ+YVIGTSTKVD+S VN +KFDDKYF K A+KKKKK EGEFFEAEK
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEK 181
Query: 401 EEKNALPQEKKDDQKTVDSSLITAIEGVPELKAYLGARFSLKSGMKPHELLF 246
EEK +PQEKK+DQKTVD++LI +IE VPELK YLGARFSL GMKPHEL+F
Sbjct: 182 EEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
>ref|NP_177546.1| putative 60S ribosomal protein L6; protein id: At1g74060.1,
supported by cDNA: gi_17065091 [Arabidopsis thaliana]
gi|25406312|pir||E96768 protein 60S ribosomal protein L6
F2P9.7 [imported] - Arabidopsis thaliana
gi|12325148|gb|AAG52524.1|AC016662_18 putative 60S
ribosomal protein L6; 21879-23145 [Arabidopsis thaliana]
gi|17065092|gb|AAL32700.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
gi|27311965|gb|AAO00948.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
Length = 233
Score = 186 bits (473), Expect = 1e-46
Identities = 90/112 (80%), Positives = 99/112 (88%)
Frame = -3
Query: 581 GPYKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEAQKKKKKGEGEFFEAEK 402
GP+KINGVPLRRVNQ+YVIGTSTKVD+S V +DKFDDKYF K A+KKKKK EGEFFEAEK
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEK 181
Query: 401 EEKNALPQEKKDDQKTVDSSLITAIEGVPELKAYLGARFSLKSGMKPHELLF 246
EEK +PQ KKDDQK VD++LI AIE VPELK YLGARFSLK GMKPHEL+F
Sbjct: 182 EEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>ref|NP_173289.1| 60S ribosomal protein L6, putative; protein id: At1g18540.1,
supported by cDNA: 573., supported by cDNA: gi_15451189,
supported by cDNA: gi_18377489 [Arabidopsis thaliana]
gi|25402863|pir||H86318 probable 60S ribosomal protein
L6 [imported] - Arabidopsis thaliana
gi|9795602|gb|AAF98420.1|AC026238_12 Putative 60S
ribosomal protein L6 [Arabidopsis thaliana]
gi|15451190|gb|AAK96866.1| Putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
gi|18377490|gb|AAL66911.1| putative 60S ribosomal
protein L6 [Arabidopsis thaliana]
Length = 233
Score = 186 bits (473), Expect = 1e-46
Identities = 88/112 (78%), Positives = 100/112 (88%)
Frame = -3
Query: 581 GPYKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEAQKKKKKGEGEFFEAEK 402
GP+KINGVPLRRVNQ+YVIGTSTK+D+S VN +KFDDKYF K A+KKKKK EGEFFEAEK
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEK 181
Query: 401 EEKNALPQEKKDDQKTVDSSLITAIEGVPELKAYLGARFSLKSGMKPHELLF 246
EEK +PQEKK+DQKTVD++LI +IE VPELK YLGARFSL GMKPHEL+F
Sbjct: 182 EEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,084,616
Number of Sequences: 1393205
Number of extensions: 9860310
Number of successful extensions: 45026
Number of sequences better than 10.0: 222
Number of HSP's better than 10.0 without gapping: 35408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42825
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
