Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016023A_C01 KMC016023A_c01
(946 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1... 398 e-110
pir||S63668 phragmoplastin 5 - soybean gi|1218004|gb|AAC49183.1|... 398 e-110
gb|AAM65743.1| dynamin-like protein [Arabidopsis thaliana] 392 e-108
ref|NP_680376.1| dynamin-like protein (pir||S59558); protein id:... 392 e-108
ref|NP_568602.2| dynamin-like protein (pir||S59558); protein id:... 392 e-108
>pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1| SDL
Length = 610
Score = 398 bits (1023), Expect = e-110
Identities = 200/218 (91%), Positives = 210/218 (95%)
Frame = +2
Query: 47 INKIQRACTALGDHGEATALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 226
+NKIQRACTALGDHGE +ALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV
Sbjct: 8 VNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67
Query: 227 TRRPLVLQLQKIEEGSREYGEFLHLPKKKFYDFAAVRKEIQDETDRETGRSRMISSVPIH 406
TRRPLVLQL KI+EGSREY EFLHLP+K+F DF AVRKEIQDETDRETGR++ ISSVPIH
Sbjct: 68 TRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIH 127
Query: 407 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVHDIEDMVRSYIEKPNCIILAITPANQDL 586
LSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV DIEDMVRSYIEKPNCIILAI+PANQDL
Sbjct: 128 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDL 187
Query: 587 ATSDAIKISREVDPNGERTIGVLTKIDLMDKGTDAVDV 700
ATSDAIKISREVDP G+RTIGVLTKIDLMDKGTDAVD+
Sbjct: 188 ATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDI 225
>pir||S63668 phragmoplastin 5 - soybean gi|1218004|gb|AAC49183.1| SDL5A
Length = 610
Score = 398 bits (1022), Expect = e-110
Identities = 199/218 (91%), Positives = 210/218 (96%)
Frame = +2
Query: 47 INKIQRACTALGDHGEATALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 226
+NKIQRACTALGDHGE +ALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV
Sbjct: 8 VNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67
Query: 227 TRRPLVLQLQKIEEGSREYGEFLHLPKKKFYDFAAVRKEIQDETDRETGRSRMISSVPIH 406
TRRPLVLQL KIEEGSREY EFLHLP+K+F DF AVRKEIQDETDRETGR++ IS+VPIH
Sbjct: 68 TRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIH 127
Query: 407 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVHDIEDMVRSYIEKPNCIILAITPANQDL 586
LSIYSPNVVNLTL+DLPGLTKVAVEGQPDSIV DIEDMVRSYIEKPNCIILAI+PANQDL
Sbjct: 128 LSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDL 187
Query: 587 ATSDAIKISREVDPNGERTIGVLTKIDLMDKGTDAVDV 700
ATSDAIKISREVDP G+RTIGVLTKIDLMDKGTDAVD+
Sbjct: 188 ATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDI 225
>gb|AAM65743.1| dynamin-like protein [Arabidopsis thaliana]
Length = 429
Score = 392 bits (1007), Expect = e-108
Identities = 195/218 (89%), Positives = 212/218 (96%)
Frame = +2
Query: 47 INKIQRACTALGDHGEATALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 226
+NKIQRACTALGDHG+++ALPTLWDSLPAIAVVGGQSSGKSSVLES+VGKDFLPRGSGIV
Sbjct: 8 VNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67
Query: 227 TRRPLVLQLQKIEEGSREYGEFLHLPKKKFYDFAAVRKEIQDETDRETGRSRMISSVPIH 406
TRRPLVLQLQKI++G+REY EFLHLP+KKF DFAAVRKEIQDETDRETGRS+ ISSVPIH
Sbjct: 68 TRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIH 127
Query: 407 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVHDIEDMVRSYIEKPNCIILAITPANQDL 586
LSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV DIE+MVRSYIEKPNCIILAI+PANQDL
Sbjct: 128 LSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL 187
Query: 587 ATSDAIKISREVDPNGERTIGVLTKIDLMDKGTDAVDV 700
ATSDAIKISREVDP+G+RT GVLTKIDLMDKGTDAV++
Sbjct: 188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEI 225
>ref|NP_680376.1| dynamin-like protein (pir||S59558); protein id: At5g42080.2,
supported by cDNA: 42932. [Arabidopsis thaliana]
Length = 429
Score = 392 bits (1007), Expect = e-108
Identities = 195/218 (89%), Positives = 212/218 (96%)
Frame = +2
Query: 47 INKIQRACTALGDHGEATALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 226
+NKIQRACTALGDHG+++ALPTLWDSLPAIAVVGGQSSGKSSVLES+VGKDFLPRGSGIV
Sbjct: 8 VNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67
Query: 227 TRRPLVLQLQKIEEGSREYGEFLHLPKKKFYDFAAVRKEIQDETDRETGRSRMISSVPIH 406
TRRPLVLQLQKI++G+REY EFLHLP+KKF DFAAVRKEIQDETDRETGRS+ ISSVPIH
Sbjct: 68 TRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIH 127
Query: 407 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVHDIEDMVRSYIEKPNCIILAITPANQDL 586
LSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV DIE+MVRSYIEKPNCIILAI+PANQDL
Sbjct: 128 LSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL 187
Query: 587 ATSDAIKISREVDPNGERTIGVLTKIDLMDKGTDAVDV 700
ATSDAIKISREVDP+G+RT GVLTKIDLMDKGTDAV++
Sbjct: 188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEI 225
>ref|NP_568602.2| dynamin-like protein (pir||S59558); protein id: At5g42080.1,
supported by cDNA: gi_20453080, supported by cDNA:
gi_2267212, supported by cDNA: gi_807576 [Arabidopsis
thaliana] gi|27735181|sp|P42697|DYNL_ARATH Dynamin-like
protein gi|2129608|pir||S59558 dynamin-like protein -
Arabidopsis thaliana gi|807577|gb|AAA84446.1|
GTP-binding protein gi|9757953|dbj|BAB08441.1|
dynamin-like protein [Arabidopsis thaliana]
Length = 610
Score = 392 bits (1007), Expect = e-108
Identities = 195/218 (89%), Positives = 212/218 (96%)
Frame = +2
Query: 47 INKIQRACTALGDHGEATALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 226
+NKIQRACTALGDHG+++ALPTLWDSLPAIAVVGGQSSGKSSVLES+VGKDFLPRGSGIV
Sbjct: 8 VNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67
Query: 227 TRRPLVLQLQKIEEGSREYGEFLHLPKKKFYDFAAVRKEIQDETDRETGRSRMISSVPIH 406
TRRPLVLQLQKI++G+REY EFLHLP+KKF DFAAVRKEIQDETDRETGRS+ ISSVPIH
Sbjct: 68 TRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIH 127
Query: 407 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVHDIEDMVRSYIEKPNCIILAITPANQDL 586
LSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV DIE+MVRSYIEKPNCIILAI+PANQDL
Sbjct: 128 LSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL 187
Query: 587 ATSDAIKISREVDPNGERTIGVLTKIDLMDKGTDAVDV 700
ATSDAIKISREVDP+G+RT GVLTKIDLMDKGTDAV++
Sbjct: 188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEI 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 788,355,864
Number of Sequences: 1393205
Number of extensions: 17634451
Number of successful extensions: 78267
Number of sequences better than 10.0: 289
Number of HSP's better than 10.0 without gapping: 69140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77477
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52969081112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
