Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016012A_C01 KMC016012A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197519.1| putative protein; protein id: At5g20190.1 [Arab... 178 4e-44
ref|NP_565230.1| expressed protein; protein id: At1g80130.1, sup... 152 4e-36
ref|NP_194960.1| putative protein; protein id: At4g32340.1, supp... 141 5e-33
gb|AAK64165.1| unknown protein [Arabidopsis thaliana] 141 5e-33
gb|AAM64818.1| unknown [Arabidopsis thaliana] 137 1e-31
>ref|NP_197519.1| putative protein; protein id: At5g20190.1 [Arabidopsis thaliana]
Length = 290
Score = 178 bits (452), Expect = 4e-44
Identities = 84/145 (57%), Positives = 112/145 (76%), Gaps = 7/145 (4%)
Frame = -1
Query: 587 GSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSM 408
G D+TD++YR MIEANPGN +FLSNYA++LKEVR DY+KAEEYCG+AIL +PNDG V++M
Sbjct: 152 GDDNTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAM 211
Query: 407 YADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKSL- 231
YA+L+W+ +KD++RAE Y++QAV A+P+DCYV ASYA FLWDAEE+++ E+E E+ L
Sbjct: 212 YAELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEEKEERHEEELE 271
Query: 230 ------SFFHGAAAPPPPPPLAAAS 174
+FF G P P+ A S
Sbjct: 272 HQTSRMNFFTG------PSPITAMS 290
>ref|NP_565230.1| expressed protein; protein id: At1g80130.1, supported by cDNA:
35675., supported by cDNA: gi_14334635, supported by
cDNA: gi_17104606 [Arabidopsis thaliana]
gi|25406635|pir||H96832 hypothetical protein F18B13.21
[imported] - Arabidopsis thaliana
gi|5902369|gb|AAD55471.1|AC009322_11 Unknown protein
[Arabidopsis thaliana] gi|14334636|gb|AAK59496.1|
unknown protein [Arabidopsis thaliana]
gi|17104607|gb|AAL34192.1| unknown protein [Arabidopsis
thaliana] gi|21593053|gb|AAM65002.1| unknown
[Arabidopsis thaliana]
Length = 305
Score = 152 bits (383), Expect = 4e-36
Identities = 72/126 (57%), Positives = 91/126 (72%)
Frame = -1
Query: 581 DSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYA 402
D+TD YYR MI++NPGN L NYA++LKEV+ D KAEEYC +AIL N NDG V+S+YA
Sbjct: 163 DATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYA 222
Query: 401 DLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKSLSFF 222
DLI +++D RA +YY QAVK SP+DCYV ASYA FLWD +ED++ E E++LS
Sbjct: 223 DLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEEEENLSDE 282
Query: 221 HGAAAP 204
G P
Sbjct: 283 TGHVPP 288
>ref|NP_194960.1| putative protein; protein id: At4g32340.1, supported by cDNA:
34819., supported by cDNA: gi_14532727 [Arabidopsis
thaliana] gi|7486637|pir||T05344 hypothetical protein
F8B4.40 - Arabidopsis thaliana
gi|2864610|emb|CAA16957.1| putative protein [Arabidopsis
thaliana] gi|4049336|emb|CAA22561.1| putative protein
[Arabidopsis thaliana] gi|7270138|emb|CAB79951.1|
putative protein [Arabidopsis thaliana]
gi|21592985|gb|AAM64934.1| unknown [Arabidopsis
thaliana] gi|23297278|gb|AAN12931.1| unknown protein
[Arabidopsis thaliana]
Length = 238
Score = 141 bits (356), Expect = 5e-33
Identities = 69/121 (57%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Frame = -1
Query: 587 GSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPN-DGEVMS 411
G S D YY MI+ PG+ L LSNYAR+LKEV+ D KAEEYC +A+L+ DGE++S
Sbjct: 106 GGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLS 165
Query: 410 MYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKSL 231
MY DLIW+++ D RA++YYDQAV++SPDDC VLASYA FLWDAEE+ + E+ E
Sbjct: 166 MYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEEEESKHHEDGF 225
Query: 230 S 228
S
Sbjct: 226 S 226
>gb|AAK64165.1| unknown protein [Arabidopsis thaliana]
Length = 238
Score = 141 bits (356), Expect = 5e-33
Identities = 69/121 (57%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Frame = -1
Query: 587 GSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPN-DGEVMS 411
G S D YY MI+ PG+ L LSNYAR+LKEV+ D KAEEYC +A+L+ DGE++S
Sbjct: 106 GGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLS 165
Query: 410 MYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKSL 231
MY DLIW+++ D RA++YYDQAV++SPDDC VLASYA FLWDAEE+ + E+ E
Sbjct: 166 MYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEEEESKHHEDGF 225
Query: 230 S 228
S
Sbjct: 226 S 226
>gb|AAM64818.1| unknown [Arabidopsis thaliana]
Length = 266
Score = 137 bits (344), Expect = 1e-31
Identities = 62/110 (56%), Positives = 79/110 (71%)
Frame = -1
Query: 566 YYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWE 387
YYR M+ +NP N L L NY ++L EV D AEEY G+AIL NP DGE +SMY LIWE
Sbjct: 143 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 202
Query: 386 SYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEK 237
+ +D RA+ Y+DQAV ASP+DC VL SYA F+W+AE+DDD ++E E+
Sbjct: 203 TKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEE 252
Score = 34.3 bits (77), Expect = 1.2
Identities = 12/44 (27%), Positives = 29/44 (65%)
Frame = -1
Query: 383 YKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQE 252
Y+D ++ YY + ++++P++ +L +Y FL++ E+D + +E
Sbjct: 134 YEDKSKIGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEE 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,914,982
Number of Sequences: 1393205
Number of extensions: 11290886
Number of successful extensions: 67169
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 45691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62952
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
