Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016004A_C01 KMC016004A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194253.2| putative protein; protein id: At4g25230.1, supp... 135 5e-31
ref|NP_568760.1| putative protein; protein id: At5g51450.1, supp... 127 1e-28
gb|AAL32977.1| AT5g51450/MFG13_16 [Arabidopsis thaliana] 127 1e-28
pir||T05544 hypothetical protein F24A6.70 - Arabidopsis thaliana... 105 6e-22
dbj|BAB09756.1| contains similarity to autocrine motility factor... 97 2e-19
>ref|NP_194253.2| putative protein; protein id: At4g25230.1, supported by cDNA:
gi_18176186 [Arabidopsis thaliana]
gi|18176187|gb|AAL60000.1| unknown protein [Arabidopsis
thaliana]
Length = 578
Score = 135 bits (339), Expect = 5e-31
Identities = 63/98 (64%), Positives = 80/98 (81%)
Frame = -2
Query: 608 TYAQTAFEDTAWNLWPINPSQASASGSTIPSTGGRLPGGTGSLHIRTPSRSASDNTANLL 429
+YAQTA +D AW+LWP+NPSQAS S +T+P G G TG LH+RT S + +++ N+L
Sbjct: 484 SYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNG---GRTGGLHLRTVSNTTNESLTNIL 540
Query: 428 AMADTVREVLPHIPDDIIFQDLQQTNSVTVTVNNLLQM 315
AMA+TVREV+PH+PD+IIFQDLQ+TNSV VTVNNLLQM
Sbjct: 541 AMAETVREVMPHVPDEIIFQDLQRTNSVAVTVNNLLQM 578
>ref|NP_568760.1| putative protein; protein id: At5g51450.1, supported by cDNA:
gi_17063160 [Arabidopsis thaliana]
Length = 577
Score = 127 bits (318), Expect = 1e-28
Identities = 63/96 (65%), Positives = 78/96 (80%)
Frame = -2
Query: 602 AQTAFEDTAWNLWPINPSQASASGSTIPSTGGRLPGGTGSLHIRTPSRSASDNTANLLAM 423
AQT +D +W LWP+NPSQAS S + +P G G TG LH+RT SR+A+ N A++LAM
Sbjct: 486 AQTTLDDASWGLWPMNPSQASTSSTYVPPGAG---GRTGGLHLRTVSRAAN-NMASILAM 541
Query: 422 ADTVREVLPHIPDDIIFQDLQQTNSVTVTVNNLLQM 315
A+TVREVLPH+PD+IIFQDLQ+TNSV+VTVNNLLQM
Sbjct: 542 AETVREVLPHVPDEIIFQDLQRTNSVSVTVNNLLQM 577
>gb|AAL32977.1| AT5g51450/MFG13_16 [Arabidopsis thaliana]
Length = 577
Score = 127 bits (318), Expect = 1e-28
Identities = 63/96 (65%), Positives = 78/96 (80%)
Frame = -2
Query: 602 AQTAFEDTAWNLWPINPSQASASGSTIPSTGGRLPGGTGSLHIRTPSRSASDNTANLLAM 423
AQT +D +W LWP+NPSQAS S + +P G G TG LH+RT SR+A+ N A++LAM
Sbjct: 486 AQTTLDDASWGLWPMNPSQASTSSTYVPPGAG---GRTGGLHLRTVSRAAN-NMASILAM 541
Query: 422 ADTVREVLPHIPDDIIFQDLQQTNSVTVTVNNLLQM 315
A+TVREVLPH+PD+IIFQDLQ+TNSV+VTVNNLLQM
Sbjct: 542 AETVREVLPHVPDEIIFQDLQRTNSVSVTVNNLLQM 577
>pir||T05544 hypothetical protein F24A6.70 - Arabidopsis thaliana
gi|4454011|emb|CAA23064.1| putative protein [Arabidopsis
thaliana] gi|7269374|emb|CAB81334.1| putative protein
[Arabidopsis thaliana]
Length = 594
Score = 105 bits (261), Expect = 6e-22
Identities = 47/80 (58%), Positives = 63/80 (78%)
Frame = -2
Query: 608 TYAQTAFEDTAWNLWPINPSQASASGSTIPSTGGRLPGGTGSLHIRTPSRSASDNTANLL 429
+YAQTA +D AW+LWP+NPSQAS S +T+P G G TG LH+RT S + +++ N+L
Sbjct: 508 SYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNG---GRTGGLHLRTVSNTTNESLTNIL 564
Query: 428 AMADTVREVLPHIPDDIIFQ 369
AMA+TVREV+PH+PD+IIFQ
Sbjct: 565 AMAETVREVMPHVPDEIIFQ 584
>dbj|BAB09756.1| contains similarity to autocrine motility factor
receptor~gene_id:MFG13.16 [Arabidopsis thaliana]
Length = 582
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = -2
Query: 602 AQTAFEDTAWNLWPINPSQASASGSTIPSTGGRLPGGTGSLHIRTPSRSASDNTANLLAM 423
AQT +D +W LWP+NPSQAS S + +P G G TG LH+RT SR+A+ N A++LAM
Sbjct: 486 AQTTLDDASWGLWPMNPSQASTSSTYVPPGAG---GRTGGLHLRTVSRAAN-NMASILAM 541
Query: 422 ADTVREVLPHIPDDIIFQ 369
A+TVREVLPH+PD+IIFQ
Sbjct: 542 AETVREVLPHVPDEIIFQ 559
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,323,841
Number of Sequences: 1393205
Number of extensions: 11288772
Number of successful extensions: 32796
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 31568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32758
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
