Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016001A_C01 KMC016001A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic (TIM) ... 295 3e-79
pir||T50646 triose-phosphate isomerase (EC 5.3.1.1), cytosolic [... 290 7e-78
ref|NP_191104.1| cytosolic triosephosphatisomerase; protein id: ... 290 7e-78
dbj|BAB93230.1| putative triosephosphate isomerase [Oryza sativa... 287 8e-77
sp|P12863|TPIS_MAIZE TRIOSEPHOSPHATE ISOMERASE, CYTOSOLIC (TIM) ... 286 1e-76
>sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic (TIM) gi|99499|pir||A32187
triose-phosphate isomerase (EC 5.3.1.1) - Coptis
japonica gi|556171|gb|AAB62730.1| triosephosphate
isomerase [Coptis japonica]
Length = 253
Score = 295 bits (755), Expect = 3e-79
Identities = 141/173 (81%), Positives = 158/173 (90%)
Frame = +1
Query: 70 MGRKFFVGGNWKCNGTTEQVKKIVGTLNEAKVPGEDIVEVVASPPFVFLSFVKALLRSDF 249
MGRKFFVGGNWKCNGT+E+VKKIV LNEA+VP ED+VEVV SPP+VFL FVK LLR+DF
Sbjct: 1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADF 60
Query: 250 HVAAQNCWVHKGGAYTGEVSAEMLVNLDIPWVILGHSERRALLKESSEFVADKVAYALSQ 429
HVAAQNCWV KGGA+TGEVSAEMLVNL IPWVILGHSERRALL ES+EFV DK AYALSQ
Sbjct: 61 HVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQ 120
Query: 430 NLKVIACIGETLEQREAGTTLAVVSEQTKAIAAKISNWDNVVLAYEPVWAIGT 588
LKVIAC+GETLEQREAG+T++VV+ QTKAIA K+S+W N+V+AYEPVWAIGT
Sbjct: 121 GLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGT 173
>pir||T50646 triose-phosphate isomerase (EC 5.3.1.1), cytosolic [imported] -
Arabidopsis thaliana gi|414550|gb|AAA03449.1| cytosolic
triose phosphate isomerase gi|742408|prf||2009415A
triose phosphate isomerase
Length = 254
Score = 290 bits (743), Expect = 7e-78
Identities = 138/173 (79%), Positives = 156/173 (89%)
Frame = +1
Query: 70 MGRKFFVGGNWKCNGTTEQVKKIVGTLNEAKVPGEDIVEVVASPPFVFLSFVKALLRSDF 249
M RKFFVGGNWKCNGT E+VKKIV TLNEA+VP +D+VEVV SPP+VFL VK+ LRSDF
Sbjct: 1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60
Query: 250 HVAAQNCWVHKGGAYTGEVSAEMLVNLDIPWVILGHSERRALLKESSEFVADKVAYALSQ 429
VAAQNCWV KGGA+TGEVSAEMLVNLDIPWVILGHSERRA+L ESSEFV DKVAYAL+Q
Sbjct: 61 FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120
Query: 430 NLKVIACIGETLEQREAGTTLAVVSEQTKAIAAKISNWDNVVLAYEPVWAIGT 588
LKVIAC+GETLE+REAG+T+ VV+ QTKAIA +++NW NVV+AYEPVWAIGT
Sbjct: 121 GLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGT 173
>ref|NP_191104.1| cytosolic triosephosphatisomerase; protein id: At3g55440.1,
supported by cDNA: 28516., supported by cDNA:
gi_14030670, supported by cDNA: gi_18491102, supported
by cDNA: gi_414549 [Arabidopsis thaliana]
gi|13432260|sp|P48491|TPIS_ARATH Triosephosphate
isomerase, cytosolic (TIM) gi|11270461|pir||T47683
cytosolic triosephosphatisomerase - Arabidopsis thaliana
gi|7076787|emb|CAB75902.1| cytosolic
triosephosphatisomerase [Arabidopsis thaliana]
gi|14030671|gb|AAK53010.1|AF375426_1
AT3g55440/T22E16_100 [Arabidopsis thaliana]
gi|18491103|gb|AAL69518.1| AT3g55440/T22E16_100
[Arabidopsis thaliana]
Length = 254
Score = 290 bits (743), Expect = 7e-78
Identities = 138/173 (79%), Positives = 156/173 (89%)
Frame = +1
Query: 70 MGRKFFVGGNWKCNGTTEQVKKIVGTLNEAKVPGEDIVEVVASPPFVFLSFVKALLRSDF 249
M RKFFVGGNWKCNGT E+VKKIV TLNEA+VP +D+VEVV SPP+VFL VK+ LRSDF
Sbjct: 1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60
Query: 250 HVAAQNCWVHKGGAYTGEVSAEMLVNLDIPWVILGHSERRALLKESSEFVADKVAYALSQ 429
VAAQNCWV KGGA+TGEVSAEMLVNLDIPWVILGHSERRA+L ESSEFV DKVAYAL+Q
Sbjct: 61 FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120
Query: 430 NLKVIACIGETLEQREAGTTLAVVSEQTKAIAAKISNWDNVVLAYEPVWAIGT 588
LKVIAC+GETLE+REAG+T+ VV+ QTKAIA +++NW NVV+AYEPVWAIGT
Sbjct: 121 GLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGT 173
>dbj|BAB93230.1| putative triosephosphate isomerase [Oryza sativa (japonica
cultivar-group)]
Length = 255
Score = 287 bits (734), Expect = 8e-77
Identities = 140/171 (81%), Positives = 152/171 (88%)
Frame = +1
Query: 76 RKFFVGGNWKCNGTTEQVKKIVGTLNEAKVPGEDIVEVVASPPFVFLSFVKALLRSDFHV 255
RKFFVGGNWKCNGT E VKKIV LNEA+VP ED+VEVV SPPFVFL VK LLR DF V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 256 AAQNCWVHKGGAYTGEVSAEMLVNLDIPWVILGHSERRALLKESSEFVADKVAYALSQNL 435
AAQNCWV KGGA+TGE+SAEMLVNL +PWVILGHSERRAL+ ESS+FVADK+AYALSQ +
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
Query: 436 KVIACIGETLEQREAGTTLAVVSEQTKAIAAKISNWDNVVLAYEPVWAIGT 588
KVIACIGETLEQREAGTT+ VV+ QTKAIA KIS+W NVVLAYEPVWAIGT
Sbjct: 124 KVIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGT 174
>sp|P12863|TPIS_MAIZE TRIOSEPHOSPHATE ISOMERASE, CYTOSOLIC (TIM) gi|68426|pir||ISZMT
triose-phosphate isomerase (EC 5.3.1.1) - maize
gi|168647|gb|AAB81110.1| triosephosphate isomerase 1
[Zea mays] gi|217974|dbj|BAA00009.1| triosephosphate
isomerase [Zea mays]
Length = 253
Score = 286 bits (732), Expect = 1e-76
Identities = 138/173 (79%), Positives = 154/173 (88%)
Frame = +1
Query: 70 MGRKFFVGGNWKCNGTTEQVKKIVGTLNEAKVPGEDIVEVVASPPFVFLSFVKALLRSDF 249
MGRKFFVGGNWKCNGTT+QV+KIV TLNE +VP D+VEVV SPP+VFL VK+ LR +F
Sbjct: 1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEF 60
Query: 250 HVAAQNCWVHKGGAYTGEVSAEMLVNLDIPWVILGHSERRALLKESSEFVADKVAYALSQ 429
HVAAQNCWV KGGA+TGEVSAEMLVNL +PWVILGHSERRALL ES+EFV DKVAYALSQ
Sbjct: 61 HVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQ 120
Query: 430 NLKVIACIGETLEQREAGTTLAVVSEQTKAIAAKISNWDNVVLAYEPVWAIGT 588
LKVIAC+GETLEQREAG+T+ VV+ QTKAIA KI +W NVV+AYEPVWAIGT
Sbjct: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGT 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,503,417
Number of Sequences: 1393205
Number of extensions: 11343640
Number of successful extensions: 40654
Number of sequences better than 10.0: 421
Number of HSP's better than 10.0 without gapping: 34855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39262
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
