Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015990A_C01 KMC015990A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00076042.1| hypothetical protein [Methanosarcina barkeri] 33 2.8
gb|EAA16649.1| Patatin, putative [Plasmodium yoelii yoelii] 32 6.2
ref|NP_688417.1| conserved hypothetical protein [Streptococcus a... 32 8.1
>gb|ZP_00076042.1| hypothetical protein [Methanosarcina barkeri]
Length = 99
Score = 33.1 bits (74), Expect = 2.8
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +2
Query: 2 LSPLSKGHSIYNTIILQHTYQNIMGGKGEERKDHYTFKYVNLSVFLHICIL**FKYQVKH 181
L P GH+I ++ +L+ N +G ER+ + TF+ S+F HI F +Q +H
Sbjct: 35 LLPKKSGHNISHSTVLKAMCINGLGFT--ERRLYPTFR----SIFSHIIFFVFFSHQSQH 88
Query: 182 FTCHNITV 205
F C I +
Sbjct: 89 FNCFFIQI 96
>gb|EAA16649.1| Patatin, putative [Plasmodium yoelii yoelii]
Length = 1852
Score = 32.0 bits (71), Expect = 6.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 44 ILQHTYQNIMGGKGEERKDHYTFKYVNL-SVFLHICIL**FKYQVKHFTCHNITVY 208
I Q+ Y N + E+ D+Y F Y+ L ++ + C+ FK + + F NI+ Y
Sbjct: 930 INQYNYYNYININKEDMNDYYIFMYIYLYAIIFYKCVFLLFKEEKEIFEKSNISFY 985
>ref|NP_688417.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
gi|25011532|ref|NP_735927.1| Unknown [Streptococcus
agalactiae NEM316] gi|22534448|gb|AAN00290.1|AE014256_22
conserved hypothetical protein [Streptococcus agalactiae
2603V/R] gi|24413071|emb|CAD47149.1| Unknown
[Streptococcus agalactiae NEM316]
Length = 117
Score = 31.6 bits (70), Expect = 8.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 398 VRSFIDHHVLISLHLNHFLYLGMIFKFCLE 309
V SFI HH+ +L +N L+ ++F FCLE
Sbjct: 53 VVSFIAHHLGFALTMNFLLFGAILFLFCLE 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,917,852
Number of Sequences: 1393205
Number of extensions: 10807655
Number of successful extensions: 22688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22685
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
