Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015979A_C01 KMC015979A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199380.1| FKBP-type peptidyl-prolyl cis-trans isomerase; ... 89 4e-17
emb|CAD35362.1| FK506 binding protein 1 [Arabidopsis thaliana] 89 4e-17
ref|NP_568067.1| FKBP-type peptidyl-prolyl cis-trans isomerase, ... 61 9e-09
gb|AAK97696.1| AT4g39710/T19P19_100 [Arabidopsis thaliana] 61 9e-09
ref|NP_769045.1| Peptidylprolyl isomerase [Bradyrhizobium japoni... 52 7e-06
>ref|NP_199380.1| FKBP-type peptidyl-prolyl cis-trans isomerase; protein id:
At5g45680.1, supported by cDNA: gi_18086456, supported
by cDNA: gi_20147124 [Arabidopsis thaliana]
gi|21542069|sp|Q9SCY2|FKB3_ARATH Probable FKBP-type
peptidyl-prolyl cis-trans isomerase 3, chloroplast
precursor (Ppiase) (Rotamase) (FK506 binding protein 1)
gi|9758671|dbj|BAB09210.1| contains similarity to
FKBP-type peptidyl-prolyl cis-trans
isomerase~gene_id:MRA19.7 [Arabidopsis thaliana]
gi|18086457|gb|AAL57682.1| AT5g45680/MRA19_7
[Arabidopsis thaliana] gi|20147125|gb|AAM10279.1|
AT5g45680/MRA19_7 [Arabidopsis thaliana]
Length = 208
Score = 89.0 bits (219), Expect = 4e-17
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = -3
Query: 567 PPMLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFVSK 424
PPML GGKRTL++PPELAYG RGAGC+GGSC+IPP SVLLFD+E++ K
Sbjct: 160 PPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 207
>emb|CAD35362.1| FK506 binding protein 1 [Arabidopsis thaliana]
Length = 208
Score = 89.0 bits (219), Expect = 4e-17
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = -3
Query: 567 PPMLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFVSK 424
PPML GGKRTL++PPELAYG RGAGC+GGSC+IPP SVLLFD+E++ K
Sbjct: 160 PPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 207
>ref|NP_568067.1| FKBP-type peptidyl-prolyl cis-trans isomerase, putative; protein
id: At4g39710.1, supported by cDNA: gi_15529203
[Arabidopsis thaliana] gi|6686798|emb|CAB64721.1| FKBP
like protein [Arabidopsis thaliana]
Length = 217
Score = 61.2 bits (147), Expect = 9e-09
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = -3
Query: 567 PPMLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFV 430
PPM GGKR L++PP+LAYG AGC G C IP ++ LL+D+ FV
Sbjct: 163 PPMRVGGKRKLQIPPKLAYGPEPAGCFSGDCNIPGNATLLYDINFV 208
>gb|AAK97696.1| AT4g39710/T19P19_100 [Arabidopsis thaliana]
Length = 77
Score = 61.2 bits (147), Expect = 9e-09
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = -3
Query: 567 PPMLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFV 430
PPM GGKR L++PP+LAYG AGC G C IP ++ LL+D+ FV
Sbjct: 23 PPMRVGGKRKLQIPPKLAYGPEPAGCFSGDCNIPGNATLLYDINFV 68
>ref|NP_769045.1| Peptidylprolyl isomerase [Bradyrhizobium japonicum]
gi|27350660|dbj|BAC47670.1| Peptidylprolyl isomerase
[Bradyrhizobium japonicum USDA 110]
Length = 154
Score = 51.6 bits (122), Expect = 7e-06
Identities = 25/45 (55%), Positives = 33/45 (72%)
Frame = -3
Query: 561 MLAGGKRTLKLPPELAYGSRGAGCRGGSCVIPPDSVLLFDVEFVS 427
M GGKRTL +PP+L YG+RGAG VIPP++ L+FDVE ++
Sbjct: 113 MKVGGKRTLIIPPQLGYGARGAG-----GVIPPNATLMFDVELLA 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,560,561
Number of Sequences: 1393205
Number of extensions: 10009264
Number of successful extensions: 28700
Number of sequences better than 10.0: 253
Number of HSP's better than 10.0 without gapping: 27453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28524
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
