Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015977A_C01 KMC015977A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8LHP0|U222_ORYSA Hypothetical protein P0519E12.3 gi|22296365... 162 2e-39
ref|NP_568654.1| expressed protein; protein id: At5g46030.1, sup... 156 1e-37
dbj|BAB08248.1| gene_id:MCL19.8~pir||T27174~similar to unknown p... 89 9e-23
ref|NP_594786.1| hypothetical protein [Schizosaccharomyces pombe... 97 2e-19
ref|XP_195085.1| similar to hypothetical protein MGC4549 [Homo s... 96 4e-19
>sp|Q8LHP0|U222_ORYSA Hypothetical protein P0519E12.3 gi|22296365|dbj|BAC10134.1|
P0519E12.3 [Oryza sativa (japonica cultivar-group)]
Length = 89
Score = 162 bits (411), Expect = 2e-39
Identities = 77/89 (86%), Positives = 82/89 (91%), Gaps = 1/89 (1%)
Frame = -3
Query: 491 MGKRKAKAKPAPKKRMDKLDTVFSCPFCHHGSSVECRIDMKNLIGEASCGICQESFSTTI 312
MGKRK+ AKP PKKRMDKLDTVFSCPFC+HGSSVECRIDMKNLIGEASC ICQE+FSTT+
Sbjct: 1 MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60
Query: 311 TALSEAIDIYSEWIDECERVNN-PDDDGA 228
AL+E IDIYSEWIDECERVNN DDDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89
>ref|NP_568654.1| expressed protein; protein id: At5g46030.1, supported by cDNA:
15222. [Arabidopsis thaliana]
gi|25453307|sp|Q8LEF3|U222_ARATH Hypothetical protein
At5g46030 gi|21553585|gb|AAM62678.1| unknown
[Arabidopsis thaliana] gi|25082953|gb|AAN72021.1|
putative protein [Arabidopsis thaliana]
Length = 120
Score = 156 bits (395), Expect = 1e-37
Identities = 71/86 (82%), Positives = 81/86 (93%)
Frame = -3
Query: 491 MGKRKAKAKPAPKKRMDKLDTVFSCPFCHHGSSVECRIDMKNLIGEASCGICQESFSTTI 312
MGKRK++AKPAP KRMDKLDT+FSCPFC+HGSSVEC IDMK+LIG+A+C IC+ESFSTTI
Sbjct: 1 MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60
Query: 311 TALSEAIDIYSEWIDECERVNNPDDD 234
TAL+EAIDIYSEWIDECERVN +DD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86
>dbj|BAB08248.1| gene_id:MCL19.8~pir||T27174~similar to unknown protein [Arabidopsis
thaliana]
Length = 238
Score = 88.6 bits (218), Expect(2) = 9e-23
Identities = 42/59 (71%), Positives = 50/59 (84%), Gaps = 4/59 (6%)
Frame = -3
Query: 398 SSVECR----IDMKNLIGEASCGICQESFSTTITALSEAIDIYSEWIDECERVNNPDDD 234
S+ C+ IDMK+LIG+A+C IC+ESFSTTITAL+EAIDIYSEWIDECERVN +DD
Sbjct: 146 SNASCKMNHNIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDD 204
Score = 39.7 bits (91), Expect(2) = 9e-23
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = -1
Query: 490 WERGRPKPSQLPRNEWISLTLCLAALSAIMAAVLSAA 380
WERG + S L R+EWISLT L LSAI V +A+
Sbjct: 113 WERGNQEQSLLLRSEWISLTQSLVVLSAITGLVSNAS 149
>ref|NP_594786.1| hypothetical protein [Schizosaccharomyces pombe]
gi|3183361|sp|O13868|YE12_SCHPO Hypothetical protein
C1B3.02c in chromosome I gi|7490909|pir||T38020
hypothetical protein SPAC1B3.02c - fission yeast
(Schizosaccharomyces pombe) gi|2330736|emb|CAB11231.1|
hypothetical protein [Schizosaccharomyces pombe]
Length = 107
Score = 96.7 bits (239), Expect = 2e-19
Identities = 44/82 (53%), Positives = 55/82 (66%)
Frame = -3
Query: 491 MGKRKAKAKPAPKKRMDKLDTVFSCPFCHHGSSVECRIDMKNLIGEASCGICQESFSTTI 312
MGKRKAKAK PK+R LDT F+C FC+H SV C +D ++ +G C IC +S I
Sbjct: 1 MGKRKAKAKVKPKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLI 60
Query: 311 TALSEAIDIYSEWIDECERVNN 246
TALS ID+YS+WID C+ V N
Sbjct: 61 TALSAPIDVYSDWIDACDAVAN 82
>ref|XP_195085.1| similar to hypothetical protein MGC4549 [Homo sapiens] [Mus
musculus]
Length = 151
Score = 95.5 bits (236), Expect = 4e-19
Identities = 42/79 (53%), Positives = 52/79 (65%)
Frame = -3
Query: 491 MGKRKAKAKPAPKKRMDKLDTVFSCPFCHHGSSVECRIDMKNLIGEASCGICQESFSTTI 312
MG+RK+K KP PKK L+T F+CPFC+H S E ++D G SC +C E F T I
Sbjct: 1 MGRRKSKRKPPPKKMTGTLETEFTCPFCNHDKSCEVKMDRGRKTGIISCTVCLEEFQTLI 60
Query: 311 TALSEAIDIYSEWIDECER 255
T LSE +D+YSEWID C R
Sbjct: 61 THLSEPVDVYSEWIDACSR 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,066,695
Number of Sequences: 1393205
Number of extensions: 9900790
Number of successful extensions: 26920
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 26074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26898
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
