Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015972A_C01 KMC015972A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175561.1| ABC transporter family protein; protein id: At1... 122 3e-27
ref|NP_188746.2| ABC transporter family protein; protein id: At3... 114 1e-24
gb|AAM13053.1| unknown protein [Arabidopsis thaliana] gi|2319839... 114 1e-24
ref|NP_175557.1| ATP-dependent transmembrane transporter, putati... 105 4e-22
dbj|BAC43047.1| putative ATP-dependent transmembrane transporter... 105 4e-22
>ref|NP_175561.1| ABC transporter family protein; protein id: At1g51500.1, supported
by cDNA: gi_15724277, supported by cDNA: gi_20260525
[Arabidopsis thaliana] gi|25297510|pir||D96553
hypothetical protein F5D21.6 [imported] - Arabidopsis
thaliana gi|12325360|gb|AAG52619.1|AC024261_6
ATP-dependent transmembrane transporter, putative;
39775-42780 [Arabidopsis thaliana]
gi|15724278|gb|AAL06532.1|AF412079_1 At1g51500/F5D21_6
[Arabidopsis thaliana] gi|20260526|gb|AAM13161.1|
ATP-dependent transmembrane transporter, putative
[Arabidopsis thaliana]
Length = 687
Score = 122 bits (307), Expect = 3e-27
Identities = 57/100 (57%), Positives = 78/100 (78%), Gaps = 3/100 (3%)
Frame = -2
Query: 600 LTGEYVITHMLGIELKHSKWMDLAALFIILACYRLLFFAILKFKERASPLFQSLYAQRTI 421
+TGE VI + G+++ HSKW DL+A+ +IL CYR+LFF +LK KERA P +++ A+RT+
Sbjct: 588 MTGEQVINKIFGVQVTHSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQAKRTM 647
Query: 420 QQLEKRPSFRKMP---SFPSPRHQPLYSLSSQEGLDSPLN 310
+ L+KRPSF+K+P S S RHQPL+SLSSQEGL SP+N
Sbjct: 648 KSLKKRPSFKKVPSLSSLSSRRHQPLHSLSSQEGLTSPIN 687
>ref|NP_188746.2| ABC transporter family protein; protein id: At3g21090.1, supported
by cDNA: gi_20260309 [Arabidopsis thaliana]
Length = 691
Score = 114 bits (285), Expect = 1e-24
Identities = 55/104 (52%), Positives = 77/104 (73%), Gaps = 7/104 (6%)
Frame = -2
Query: 600 LTGEYVITHMLGIELKHSKWMDLAALFIILACYRLLFFAILKFKERASPLFQSLYAQRTI 421
+TGE VI + G+++ +SKW DLAA+ IL CYRLLFF +LK +ERA P +++ A+RT+
Sbjct: 587 MTGEEVIEKVFGVKVTYSKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAIQAKRTM 646
Query: 420 QQLEKRPSFRKMP-------SFPSPRHQPLYSLSSQEGLDSPLN 310
+ L++RPSF++MP S S RHQPL SLSSQEGL+SP++
Sbjct: 647 RNLDRRPSFKRMPSLSLSLSSMSSRRHQPLRSLSSQEGLNSPIH 690
>gb|AAM13053.1| unknown protein [Arabidopsis thaliana] gi|23198394|gb|AAN15724.1|
unknown protein [Arabidopsis thaliana]
Length = 691
Score = 114 bits (285), Expect = 1e-24
Identities = 55/104 (52%), Positives = 77/104 (73%), Gaps = 7/104 (6%)
Frame = -2
Query: 600 LTGEYVITHMLGIELKHSKWMDLAALFIILACYRLLFFAILKFKERASPLFQSLYAQRTI 421
+TGE VI + G+++ +SKW DLAA+ IL CYRLLFF +LK +ERA P +++ A+RT+
Sbjct: 587 MTGEEVIEKVFGVKVTYSKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAIQAKRTM 646
Query: 420 QQLEKRPSFRKMP-------SFPSPRHQPLYSLSSQEGLDSPLN 310
+ L++RPSF++MP S S RHQPL SLSSQEGL+SP++
Sbjct: 647 RNLDRRPSFKRMPSLSLSLSSMSSRRHQPLRSLSSQEGLNSPIH 690
>ref|NP_175557.1| ATP-dependent transmembrane transporter, putative; protein id:
At1g51460.1 [Arabidopsis thaliana]
gi|25297509|pir||H96552 hypothetical protein F5D21.8
[imported] - Arabidopsis thaliana
gi|12325372|gb|AAG52631.1|AC024261_18 ATP-dependent
transmembrane transporter, putative; 59412-63615
[Arabidopsis thaliana]
Length = 678
Score = 105 bits (262), Expect = 4e-22
Identities = 49/97 (50%), Positives = 71/97 (72%)
Frame = -2
Query: 600 LTGEYVITHMLGIELKHSKWMDLAALFIILACYRLLFFAILKFKERASPLFQSLYAQRTI 421
+ GE ++ +LGI + SKW+DLA + +IL YR+ FFAILKF+E+ P+ LY +RT+
Sbjct: 582 MKGELILQTVLGINPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVIHMLYTKRTL 641
Query: 420 QQLEKRPSFRKMPSFPSPRHQPLYSLSSQEGLDSPLN 310
++KRPSFR+M FPS R+ ++LSSQEGL+SPL+
Sbjct: 642 SHIQKRPSFRRMTPFPSRRYPVHHALSSQEGLNSPLH 678
>dbj|BAC43047.1| putative ATP-dependent transmembrane transporter [Arabidopsis
thaliana]
Length = 678
Score = 105 bits (262), Expect = 4e-22
Identities = 49/97 (50%), Positives = 71/97 (72%)
Frame = -2
Query: 600 LTGEYVITHMLGIELKHSKWMDLAALFIILACYRLLFFAILKFKERASPLFQSLYAQRTI 421
+ GE ++ +LGI + SKW+DLA + +IL YR+ FFAILKF+E+ P+ LY +RT+
Sbjct: 582 MKGELILQTVLGINPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVIHMLYTKRTL 641
Query: 420 QQLEKRPSFRKMPSFPSPRHQPLYSLSSQEGLDSPLN 310
++KRPSFR+M FPS R+ ++LSSQEGL+SPL+
Sbjct: 642 SHIQKRPSFRRMTPFPSRRYPVHHALSSQEGLNSPLH 678
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,739,906
Number of Sequences: 1393205
Number of extensions: 10360990
Number of successful extensions: 24316
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24297
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
