Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015964A_C01 KMC015964A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00108736.1| hypothetical protein [Nostoc punctiforme] 54 6e-07
ref|NP_489066.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 50 9e-06
gb|AAG42527.1| unknown [Prunus persica] 49 1e-05
gb|AAO72612.1| unknown [Oryza sativa (japonica cultivar-group)] 49 2e-05
pir||F86302 hypothetical protein F17F16.7 [imported] - Arabidops... 47 4e-05
>gb|ZP_00108736.1| hypothetical protein [Nostoc punctiforme]
Length = 494
Score = 53.5 bits (127), Expect = 6e-07
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = -3
Query: 415 PYTIIRTGALQDTPGGKQGFTFDKGSAASGSISKEDAAFVCVEALECIPQSGFIFEVANG 236
PYTIIR AL + GGK+ ++G G IS+ED A +CV+AL+ FE+
Sbjct: 416 PYTIIRPCALTEEVGGKE-LILEQGDNIKGKISREDVAELCVQALKIAKACNVTFEIKQA 474
Query: 235 ENKVS--DWKECLAALME 188
+N V+ DW++ + L++
Sbjct: 475 DNTVNSIDWQKLFSNLVK 492
>ref|NP_489066.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25530256|pir||AB2434
hypothetical protein all5026 [imported] - Nostoc sp.
(strain PCC 7120) gi|17134164|dbj|BAB76725.1|
ORF_ID:all5026~hypothetical protein [Nostoc sp. PCC
7120]
Length = 493
Score = 49.7 bits (117), Expect = 9e-06
Identities = 30/76 (39%), Positives = 42/76 (54%), Gaps = 2/76 (2%)
Frame = -3
Query: 415 PYTIIRTGALQDTPGGKQGFTFDKGSAASGSISKEDAAFVCVEALECIPQSGFIFEVANG 236
PYTIIR AL + GGK F++G G IS+ED A +C++AL+ + FEV G
Sbjct: 416 PYTIIRPCALTEEAGGK-ALIFEQGDNIRGKISREDVAELCIQALQ-QKRCNVTFEVKEG 473
Query: 235 EN--KVSDWKECLAAL 194
N + DW++ L
Sbjct: 474 TNVAEAVDWQQLFVNL 489
>gb|AAG42527.1| unknown [Prunus persica]
Length = 158
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/57 (47%), Positives = 34/57 (59%)
Frame = -3
Query: 415 PYTIIRTGALQDTPGGKQGFTFDKGSAASGSISKEDAAFVCVEALECIPQSGFIFEV 245
PYTI+R AL + P G FD+G +G IS+E+ A +CV ALE SG FEV
Sbjct: 56 PYTIVRPCALTEEPAGAD-LIFDQGDNITGKISREEVAQICVAALESHYASGKTFEV 111
>gb|AAO72612.1| unknown [Oryza sativa (japonica cultivar-group)]
Length = 500
Score = 48.5 bits (114), Expect = 2e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -3
Query: 412 YTIIRTGALQDTPGGKQGFTFDKGSAASGSISKEDAAFVCVEAL 281
YTI+R G LQ+ PGG++ FD+G+ S IS D A +CV+AL
Sbjct: 407 YTIVRPGPLQEEPGGQRALIFDQGNRISQGISCADVADICVKAL 450
>pir||F86302 hypothetical protein F17F16.7 [imported] - Arabidopsis thaliana
gi|9954733|gb|AAG09086.1|AC026237_7 Unknown Protein
[Arabidopsis thaliana]
Length = 583
Score = 47.4 bits (111), Expect = 4e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -3
Query: 412 YTIIRTGALQDTPGGKQGFTFDKGSAASGSISKEDAAFVCVEAL 281
YTIIR G L++ PGG++ FD+G+ S IS D A +CV+AL
Sbjct: 490 YTIIRPGPLKEEPGGQRALIFDQGNRISQGISCADVADICVKAL 533
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,678,726
Number of Sequences: 1393205
Number of extensions: 7064933
Number of successful extensions: 16808
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 16459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16795
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
