KMC015941A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC015941A_C01 KMC015941A_c01
gAGGGCAAAGGATTTTCTTGGTTGATTACGTATTAAAAGCTAGAATCAATCAAGATTTCT
TACAGCGCTTCACTTCTGGCCCAGGATAAAATAGATTCAACCACTTTGGCCACACTGTGT
AGTAACACTGTAAAAGTAAAGATATAATAACTGTGGAAACATTAAAAAGAAGAAAAGAAA
AAAGCCTGTAACTTCTTTTCACCCTCAAAAAGTAGGCGCAAATGAGGATGGCATTTGCAA
CTGATAGTCCCACTGGTAACATTGTAAGGCAAAATTTCACCCGACCCTTCTAACCCTACT
CCAACACCAACAGTTCTATCAGCCAAAATGCCAAAGAAATTAACTCAAAAAAGAATAAAC
AACCTATGACCTAAAAACTCAAGGGTGGTTAAACCAAGGGCCAACAGCACCATTCACATG
CCCGTTGCTATGGATCCCAACGCCATTTGGGATGATCGAGGGAGGCACCCCCACAGCCAT
TGGGGGTGACGCAGCCGGATATAATCCATGGTTGTGAGGGTGAGCATGGGGAGTCAAAAG
AGGACTCCCAGCCGGACT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC015941A_C01 KMC015941A_c01
         (558 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_180104.1| unknown protein; protein id: At2g25320.1 [Arabi...    62  6e-09
ref|NP_005452.2| v-maf musculoaponeurotic fibrosarcoma oncogene ...    37  0.13
gb|AAD30106.1|AF134157_1 MAFB/Kreisler basic region/leucine zipp...    37  0.13
ref|NP_650587.1| CG5225-PA [Drosophila melanogaster] gi|23171516...    35  0.48
ref|XP_215917.1| v-maf musculoaponeurotic fibrosarcoma oncogene ...    35  0.62

>ref|NP_180104.1| unknown protein; protein id: At2g25320.1 [Arabidopsis thaliana]
            gi|25412298|pir||A84647 hypothetical protein At2g25320
            [imported] - Arabidopsis thaliana
            gi|4567245|gb|AAD23659.1| unknown protein [Arabidopsis
            thaliana]
          Length = 1660

 Score = 61.6 bits (148), Expect = 6e-09
 Identities = 25/44 (56%), Positives = 31/44 (69%), Gaps = 3/44 (6%)
 Frame = -1

Query: 528  HAHPHNHGLYPAASP---PMAVGVPPSIIPNGVGIHSNGHVNGA 406
            H  P  H LYP   P   PMA+G+PP +IPNG G+HSNGH+NG+
Sbjct: 1611 HGLPQGHTLYPTTPPQLPPMAIGLPPQLIPNGSGVHSNGHINGS 1654

>ref|NP_005452.2| v-maf musculoaponeurotic fibrosarcoma oncogene homolog B; Kreisler
           (mouse) maf-related leucine zipper homolog;
           MAFB/Kreisler basic region/leucine zipper transcription
           factor [Homo sapiens] gi|21759268|sp|Q9Y5Q3|MAFB_HUMAN
           Transcription factor MafB (V-maf musculoaponeurotic
           fibrosarcoma oncogene homolog B)
           gi|7024351|emb|CAB75863.1| dJ644L1.1 (Kreisler (mouse)
           maf-related leucine zipper homolog) [Homo sapiens]
           gi|20381364|gb|AAH28098.1| v-maf musculoaponeurotic
           fibrosarcoma oncogene homolog B (avian) [Homo sapiens]
           gi|22477471|gb|AAH36689.1| Unknown (protein for
           MGC:43127) [Homo sapiens]
          Length = 323

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 537 LTPHAHPHNHGLYPAASPPMAVGVPPSIIPN---GVGIHSNGHVNGAVG 400
           L PHAHPH+H  + A+ PP +   P   +P    G G H+      A G
Sbjct: 155 LGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAGG 203

>gb|AAD30106.1|AF134157_1 MAFB/Kreisler basic region/leucine zipper transcription factor
           [Homo sapiens]
          Length = 323

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 537 LTPHAHPHNHGLYPAASPPMAVGVPPSIIPN---GVGIHSNGHVNGAVG 400
           L PHAHPH+H  + A+ PP +   P   +P    G G H+      A G
Sbjct: 155 LGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAGG 203

>ref|NP_650587.1| CG5225-PA [Drosophila melanogaster] gi|23171516|gb|AAF55377.2|
           CG5225-PA [Drosophila melanogaster]
          Length = 594

 Score = 35.4 bits (80), Expect = 0.48
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 555 PAGSPLLTPHAHPHNHGLY-PAASPPMAVGVPPSIIPNGVGIHSNGHVN-GAVGP 397
           P   P   PH+HPH+H  + P  +PP+ V +P   +P   G H + H + G+ GP
Sbjct: 163 PPPPPPPPPHSHPHSHHPHPPIVTPPIIVPIP---LPPQKGEHGHHHHHKGSKGP 214

>ref|XP_215917.1| v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B
           [Rattus norvegicus] gi|1708911|sp|P54842|MAFB_RAT
           Transcription factor MafB (V-maf musculoaponeurotic
           fibrosarcoma oncogene homolog B) (Transcription factor
           MAF1) gi|1326233|gb|AAB50062.1| Maf1
          Length = 323

 Score = 35.0 bits (79), Expect = 0.62
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 537 LTPHAHPHNHGLYPAASPPMAVGVPPSIIPN---GVGIHS 427
           L PHAHPH+H  + A+ PP +   P   +P    G G H+
Sbjct: 155 LGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHA 194

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,590,316
Number of Sequences: 1393205
Number of extensions: 12281516
Number of successful extensions: 43288
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 39036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42961
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MF074g04_f BP032244 1 467
2 MWM180d08_f AV767508 2 558




Lotus japonicus
Kazusa DNA Research Institute