KMC015941A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC015941A_C01 KMC015941A_c01
gAGGGCAAAGGATTTTCTTGGTTGATTACGTATTAAAAGCTAGAATCAATCAAGATTTCT
TACAGCGCTTCACTTCTGGCCCAGGATAAAATAGATTCAACCACTTTGGCCACACTGTGT
AGTAACACTGTAAAAGTAAAGATATAATAACTGTGGAAACATTAAAAAGAAGAAAAGAAA
AAAGCCTGTAACTTCTTTTCACCCTCAAAAAGTAGGCGCAAATGAGGATGGCATTTGCAA
CTGATAGTCCCACTGGTAACATTGTAAGGCAAAATTTCACCCGACCCTTCTAACCCTACT
CCAACACCAACAGTTCTATCAGCCAAAATGCCAAAGAAATTAACTCAAAAAAGAATAAAC
AACCTATGACCTAAAAACTCAAGGGTGGTTAAACCAAGGGCCAACAGCACCATTCACATG
CCCGTTGCTATGGATCCCAACGCCATTTGGGATGATCGAGGGAGGCACCCCCACAGCCAT
TGGGGGTGACGCAGCCGGATATAATCCATGGTTGTGAGGGTGAGCATGGGGAGTCAAAAG
AGGACTCCCAGCCGGACT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015941A_C01 KMC015941A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180104.1| unknown protein; protein id: At2g25320.1 [Arabi... 62 6e-09
ref|NP_005452.2| v-maf musculoaponeurotic fibrosarcoma oncogene ... 37 0.13
gb|AAD30106.1|AF134157_1 MAFB/Kreisler basic region/leucine zipp... 37 0.13
ref|NP_650587.1| CG5225-PA [Drosophila melanogaster] gi|23171516... 35 0.48
ref|XP_215917.1| v-maf musculoaponeurotic fibrosarcoma oncogene ... 35 0.62
>ref|NP_180104.1| unknown protein; protein id: At2g25320.1 [Arabidopsis thaliana]
gi|25412298|pir||A84647 hypothetical protein At2g25320
[imported] - Arabidopsis thaliana
gi|4567245|gb|AAD23659.1| unknown protein [Arabidopsis
thaliana]
Length = 1660
Score = 61.6 bits (148), Expect = 6e-09
Identities = 25/44 (56%), Positives = 31/44 (69%), Gaps = 3/44 (6%)
Frame = -1
Query: 528 HAHPHNHGLYPAASP---PMAVGVPPSIIPNGVGIHSNGHVNGA 406
H P H LYP P PMA+G+PP +IPNG G+HSNGH+NG+
Sbjct: 1611 HGLPQGHTLYPTTPPQLPPMAIGLPPQLIPNGSGVHSNGHINGS 1654
>ref|NP_005452.2| v-maf musculoaponeurotic fibrosarcoma oncogene homolog B; Kreisler
(mouse) maf-related leucine zipper homolog;
MAFB/Kreisler basic region/leucine zipper transcription
factor [Homo sapiens] gi|21759268|sp|Q9Y5Q3|MAFB_HUMAN
Transcription factor MafB (V-maf musculoaponeurotic
fibrosarcoma oncogene homolog B)
gi|7024351|emb|CAB75863.1| dJ644L1.1 (Kreisler (mouse)
maf-related leucine zipper homolog) [Homo sapiens]
gi|20381364|gb|AAH28098.1| v-maf musculoaponeurotic
fibrosarcoma oncogene homolog B (avian) [Homo sapiens]
gi|22477471|gb|AAH36689.1| Unknown (protein for
MGC:43127) [Homo sapiens]
Length = 323
Score = 37.4 bits (85), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 537 LTPHAHPHNHGLYPAASPPMAVGVPPSIIPN---GVGIHSNGHVNGAVG 400
L PHAHPH+H + A+ PP + P +P G G H+ A G
Sbjct: 155 LGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAGG 203
>gb|AAD30106.1|AF134157_1 MAFB/Kreisler basic region/leucine zipper transcription factor
[Homo sapiens]
Length = 323
Score = 37.4 bits (85), Expect = 0.13
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 537 LTPHAHPHNHGLYPAASPPMAVGVPPSIIPN---GVGIHSNGHVNGAVG 400
L PHAHPH+H + A+ PP + P +P G G H+ A G
Sbjct: 155 LGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAGG 203
>ref|NP_650587.1| CG5225-PA [Drosophila melanogaster] gi|23171516|gb|AAF55377.2|
CG5225-PA [Drosophila melanogaster]
Length = 594
Score = 35.4 bits (80), Expect = 0.48
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 555 PAGSPLLTPHAHPHNHGLY-PAASPPMAVGVPPSIIPNGVGIHSNGHVN-GAVGP 397
P P PH+HPH+H + P +PP+ V +P +P G H + H + G+ GP
Sbjct: 163 PPPPPPPPPHSHPHSHHPHPPIVTPPIIVPIP---LPPQKGEHGHHHHHKGSKGP 214
>ref|XP_215917.1| v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B
[Rattus norvegicus] gi|1708911|sp|P54842|MAFB_RAT
Transcription factor MafB (V-maf musculoaponeurotic
fibrosarcoma oncogene homolog B) (Transcription factor
MAF1) gi|1326233|gb|AAB50062.1| Maf1
Length = 323
Score = 35.0 bits (79), Expect = 0.62
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 537 LTPHAHPHNHGLYPAASPPMAVGVPPSIIPN---GVGIHS 427
L PHAHPH+H + A+ PP + P +P G G H+
Sbjct: 155 LGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHA 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,590,316
Number of Sequences: 1393205
Number of extensions: 12281516
Number of successful extensions: 43288
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 39036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42961
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MF074g04_f |
BP032244 |
1 |
467 |
2 |
MWM180d08_f |
AV767508 |
2 |
558 |
|
Lotus japonicus
Kazusa DNA Research Institute