Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015892A_C01 KMC015892A_c01
(718 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG28475.1|AF195548_1 putative histone deacetylase [Arabidops... 95 1e-18
ref|NP_201116.1| histone deacetylase; protein id: At5g63110.1, s... 94 2e-18
gb|AAD10139.1| histone deacetylase [Zea mays] 82 1e-14
gb|AAL33653.1|AF440226_1 histone deacetylase [Zea mays] 82 1e-14
gb|AAB66486.1| histone deacetylase [Arabidopsis thaliana] gi|110... 65 1e-09
>gb|AAG28475.1|AF195548_1 putative histone deacetylase [Arabidopsis thaliana]
Length = 471
Score = 94.7 bits (234), Expect = 1e-18
Identities = 52/109 (47%), Positives = 70/109 (63%), Gaps = 7/109 (6%)
Frame = -2
Query: 714 MENLNTPKDLERIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEGMDRRPQCRKWNG 535
MENLNTPKD+ERIRNTLLEQ+S L HAPS FQ TP V +E E+ M+ RP+ R W+G
Sbjct: 362 MENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETRPKPRXWSG 421
Query: 534 -EEYDSDFDEDEKD----DLKHSKLTDHMRDVSNDMEEE--KPVVHPPS 409
Y+SD D+D+K + TD ++M+++ +P V+PPS
Sbjct: 422 TATYESDSDDDDKPLHGYSCRGGATTDRDSTGEDEMDDDNPEPDVNPPS 470
>ref|NP_201116.1| histone deacetylase; protein id: At5g63110.1, supported by cDNA:
5511., supported by cDNA: gi_11066140, supported by
cDNA: gi_18176318 [Arabidopsis thaliana]
gi|10177292|dbj|BAB10553.1| histone deacetylase
[Arabidopsis thaliana] gi|18176319|gb|AAL60022.1|
putative histone deacetylase [Arabidopsis thaliana]
gi|21593886|gb|AAM65853.1| histone deacetylase
[Arabidopsis thaliana] gi|23296897|gb|AAN13198.1|
putative histone deacetylase [Arabidopsis thaliana]
Length = 471
Score = 94.0 bits (232), Expect = 2e-18
Identities = 52/109 (47%), Positives = 70/109 (63%), Gaps = 7/109 (6%)
Frame = -2
Query: 714 MENLNTPKDLERIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEGMDRRPQCRKWNG 535
MENLNTPKD+ERIRNTLLEQ+S L HAPS FQ TP V +E E+ M+ RP+ R W+G
Sbjct: 362 MENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETRPKPRIWSG 421
Query: 534 -EEYDSDFDEDEKD----DLKHSKLTDHMRDVSNDMEEE--KPVVHPPS 409
Y+SD D+D+K + TD ++M+++ +P V+PPS
Sbjct: 422 TATYESDSDDDDKPLHGYSCRGGATTDRDSTGEDEMDDDNPEPDVNPPS 470
>gb|AAD10139.1| histone deacetylase [Zea mays]
Length = 458
Score = 81.6 bits (200), Expect = 1e-14
Identities = 42/95 (44%), Positives = 58/95 (60%), Gaps = 4/95 (4%)
Frame = -2
Query: 717 NMENLNTPKDLERIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEGMDRRP--QCRK 544
++ENLNT KDLE I+N +LE +S++ H PS F PS E PEE+EE MD+RP + R
Sbjct: 362 SVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSRL 421
Query: 543 WNGEEYDSDFDEDE--KDDLKHSKLTDHMRDVSND 445
W+G YDSD ++ + K + K M+D D
Sbjct: 422 WSGGAYDSDTEDPDSLKSEGKDVTANFQMKDEPKD 456
>gb|AAL33653.1|AF440226_1 histone deacetylase [Zea mays]
Length = 436
Score = 81.6 bits (200), Expect = 1e-14
Identities = 42/95 (44%), Positives = 58/95 (60%), Gaps = 4/95 (4%)
Frame = -2
Query: 717 NMENLNTPKDLERIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEGMDRRP--QCRK 544
++ENLNT KDLE I+N +LE +S++ H PS F PS E PEE+EE MD+RP + R
Sbjct: 340 SVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSRL 399
Query: 543 WNGEEYDSDFDEDE--KDDLKHSKLTDHMRDVSND 445
W+G YDSD ++ + K + K M+D D
Sbjct: 400 WSGGAYDSDTEDPDSLKSEGKDVTANFQMKDEPKD 434
>gb|AAB66486.1| histone deacetylase [Arabidopsis thaliana]
gi|11066139|gb|AAG28474.1|AF195547_1 putative histone
deacetylase [Arabidopsis thaliana]
Length = 501
Score = 64.7 bits (156), Expect = 1e-09
Identities = 34/73 (46%), Positives = 45/73 (61%)
Frame = -2
Query: 717 NMENLNTPKDLERIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEGMDRRPQCRKWN 538
NMEN N+ + LE IRN LL +S+L HAPS PFQ P TE PE +E D+ ++W+
Sbjct: 357 NMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDE---DQEDGDKRWD 413
Query: 537 GEEYDSDFDEDEK 499
+ D D D+D K
Sbjct: 414 PDS-DMDVDDDRK 425
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 656,543,491
Number of Sequences: 1393205
Number of extensions: 14677081
Number of successful extensions: 65437
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 50936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60612
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
