Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015889A_C01 KMC015889A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173854.1| putative ribonuclease III; protein id: At1g2445... 156 2e-37
gb|AAO66545.1| hypothetical protein [Oryza sativa (japonica cult... 104 8e-22
ref|NP_465330.1| similar to ribonuclease III [Listeria monocytog... 41 0.014
ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120] gi|22654... 41 0.014
ref|NP_471253.1| similar to ribonuclease III [Listeria innocua] ... 40 0.019
>ref|NP_173854.1| putative ribonuclease III; protein id: At1g24450.1, supported by
cDNA: gi_15010593, supported by cDNA: gi_20334853
[Arabidopsis thaliana]
gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11
[Arabidopsis thaliana] gi|15010594|gb|AAK73956.1|
At1g24450/F21J9_210 [Arabidopsis thaliana]
gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210
[Arabidopsis thaliana]
Length = 191
Score = 156 bits (394), Expect = 2e-37
Identities = 77/120 (64%), Positives = 95/120 (79%)
Frame = -2
Query: 612 ISLLRRAMTHASFSEENNKALSILGAAVIETSASFHLISKDIDISAKELNRRLSQVSNVE 433
I+LLRRAMTHASFS+ENNKALSI G +IET+ S ++KDIDIS+K L R +S+VSNVE
Sbjct: 62 INLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLAKDIDISSKALGRLISEVSNVE 121
Query: 432 SSCAVDGVHLGLHKVVRVSPKTNSSAPAVVCGAFRQIFGAIAIDTGKSDDAGNVFWTIHG 253
SSCA+DG LGL K++RVS KT++S A++C FR IFGAIAID G D+A VFW +HG
Sbjct: 122 SSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIAIDAGTVDEAIKVFWKVHG 181
>gb|AAO66545.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 213
Score = 104 bits (260), Expect = 8e-22
Identities = 52/128 (40%), Positives = 78/128 (60%)
Frame = -2
Query: 606 LLRRAMTHASFSEENNKALSILGAAVIETSASFHLISKDIDISAKELNRRLSQVSNVESS 427
LLRRAMTHAS+S EN +AL++LG A +++A+ ++ D D SA ++RR S E++
Sbjct: 50 LLRRAMTHASYSRENGRALAVLGLAASQSAAALRALAADHDASASAVSRRARDASG-EAA 108
Query: 426 CAVDGVHLGLHKVVRVSPKTNSSAPAVVCGAFRQIFGAIAIDTGKSDDAGNVFWTIHGVG 247
C +G+ +VRV+ T +AP VVCGA R + GA+A+D + A VFW +H +
Sbjct: 109 CVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVAVDANSTHAAEEVFWKLHVLT 168
Query: 246 DVGVAAAL 223
AA+
Sbjct: 169 AASAKAAI 176
>ref|NP_465330.1| similar to ribonuclease III [Listeria monocytogenes EGD-e]
gi|22654060|sp|Q8Y691|RNC_LISMO Ribonuclease III (RNase
III) gi|25289228|pir||AE1300 ribonuclease III homolog
rncS [imported] - Listeria monocytogenes (strain EGD-e)
gi|16411259|emb|CAC99883.1| similar to ribonuclease III
[Listeria monocytogenes]
Length = 229
Score = 40.8 bits (94), Expect = 0.014
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Frame = -2
Query: 612 ISLLRRAMTHASFSEEN-------NKALSILGAAVIETSASFHLISKDIDISAKELNR-R 457
+ LL++A TH+S+ E+ N+ L LG AV+E + S +L +K D++ + + R
Sbjct: 18 VELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMR 77
Query: 456 LSQVSNVESSCAVDGVHLGLHKVVRVSPKTNSSA----PAVVCGAFRQIFGAIAIDTG 295
+ V + VH K VR+ + PA++ F GA+ +D G
Sbjct: 78 AAIVCEPSLVEFAEAVHFS--KYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNG 133
>ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120]
gi|22654062|sp|Q8Z023|RNC_ANASP Ribonuclease III (RNase
III) gi|25289234|pir||AH1841 ribonuclease III [imported]
- Nostoc sp. (strain PCC 7120)
gi|17135258|dbj|BAB77804.1| ribonuclease III [Nostoc sp.
PCC 7120]
Length = 228
Score = 40.8 bits (94), Expect = 0.014
Identities = 33/119 (27%), Positives = 52/119 (42%), Gaps = 10/119 (8%)
Frame = -2
Query: 606 LLRRAMTHASFSEEN------NKALSILGAAVIETSASFHLISKDIDISAKELNRRLSQV 445
LLRRA+TH S+ EN N+ L LG A++ + +L D EL RR S +
Sbjct: 12 LLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTRRRSAL 71
Query: 444 SNVESSCAVDGVHLGLHKVVRVSPKT----NSSAPAVVCGAFRQIFGAIAIDTGKSDDA 280
+ E A + +GL +R+ P ++ F + GA +D + +A
Sbjct: 72 VD-EKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSNIEA 129
>ref|NP_471253.1| similar to ribonuclease III [Listeria innocua]
gi|22654065|sp|Q92AK3|RNC_LISIN Ribonuclease III (RNase
III) gi|25289229|pir||AE1672 ribonuclease III homolog
rncS [imported] - Listeria innocua (strain Clip11262)
gi|16414420|emb|CAC97149.1| similar to ribonuclease III
[Listeria innocua]
Length = 229
Score = 40.4 bits (93), Expect = 0.019
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Frame = -2
Query: 612 ISLLRRAMTHASFSEEN-------NKALSILGAAVIETSASFHLISKDIDISAKELNR-R 457
+ LL++A TH+S+ E+ N+ L LG AV+E + S +L +K D++ + + R
Sbjct: 18 VELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMR 77
Query: 456 LSQVSNVESSCAVDGVHLGLHKVVRVSPKTNSSA----PAVVCGAFRQIFGAIAIDTG 295
+ V + VH K VR+ + PA++ F GA+ +D G
Sbjct: 78 AAIVCEPSLVEFAEAVHFS--KYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNG 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,461,534
Number of Sequences: 1393205
Number of extensions: 11250474
Number of successful extensions: 39759
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 34392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38117
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
