Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015887A_C01 KMC015887A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193174.1| hypothetical protein; protein id: At4g14380.1 [... 57 1e-07
dbj|BAC42046.1| unknown protein [Arabidopsis thaliana] gi|289507... 57 1e-07
emb|CAB96200.1| hypothetical protein [Capsella rubella] 37 0.18
ref|NP_198686.1| putative protein; protein id: At5g38700.1 [Arab... 37 0.18
emb|CAA91251.1| slow myotomal muscle tropomyosin [Salmo trutta] 36 0.31
>ref|NP_193174.1| hypothetical protein; protein id: At4g14380.1 [Arabidopsis
thaliana] gi|7485165|pir||G71405 hypothetical protein -
Arabidopsis thaliana gi|2244794|emb|CAB10217.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268143|emb|CAB78480.1| hypothetical protein
[Arabidopsis thaliana]
Length = 200
Score = 57.4 bits (137), Expect = 1e-07
Identities = 31/65 (47%), Positives = 42/65 (63%)
Frame = -1
Query: 581 TIEDAWKIVVAKSPKLQVDEKTRESKSPQLQVDEKAEEFISKFHQDMRIQKERSLLESQE 402
++EDAW+ VVA SP LQV+E+A+EFI KF + M+++KERS LE QE
Sbjct: 149 SMEDAWRRVVAASP--------------HLQVNERADEFIYKFRESMKMEKERSFLEFQE 194
Query: 401 RLDRN 387
RL R+
Sbjct: 195 RLKRS 199
>dbj|BAC42046.1| unknown protein [Arabidopsis thaliana] gi|28950725|gb|AAO63286.1|
At4g14380 [Arabidopsis thaliana]
Length = 200
Score = 57.4 bits (137), Expect = 1e-07
Identities = 31/65 (47%), Positives = 42/65 (63%)
Frame = -1
Query: 581 TIEDAWKIVVAKSPKLQVDEKTRESKSPQLQVDEKAEEFISKFHQDMRIQKERSLLESQE 402
++EDAW+ VVA SP LQV+E+A+EFI KF + M+++KERS LE QE
Sbjct: 149 SMEDAWRRVVAASP--------------HLQVNERADEFIYKFRESMKMEKERSFLEFQE 194
Query: 401 RLDRN 387
RL R+
Sbjct: 195 RLKRS 199
>emb|CAB96200.1| hypothetical protein [Capsella rubella]
Length = 470
Score = 37.0 bits (84), Expect = 0.18
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = -1
Query: 539 KLQVDEKTRESKSPQLQVDEKAEEFISKFHQDMRIQKERSLLESQERLDRN 387
K+ +E+ ES + VD+KA+EFI+KF + +R+Q+ S+ S ++ N
Sbjct: 418 KIVEEERACESNNVS-DVDKKADEFIAKFREQIRLQRIESIKRSASKISAN 467
>ref|NP_198686.1| putative protein; protein id: At5g38700.1 [Arabidopsis thaliana]
Length = 161
Score = 37.0 bits (84), Expect = 0.18
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -1
Query: 527 DEKTRESKSPQLQVDEKAEEFISKFHQDMRIQKERSLLESQERLD 393
D++ E K VD +AEEFI+KF++ M++Q++ S L+ +E D
Sbjct: 119 DQEEEEEKG----VDVRAEEFIAKFYEQMKLQRQISYLQYKEHND 159
>emb|CAA91251.1| slow myotomal muscle tropomyosin [Salmo trutta]
Length = 284
Score = 36.2 bits (82), Expect = 0.31
Identities = 17/49 (34%), Positives = 31/49 (62%)
Frame = -1
Query: 536 LQVDEKTRESKSPQLQVDEKAEEFISKFHQDMRIQKERSLLESQERLDR 390
L++D++T + Q ++D+KA E SK H D IQ ++ L +++ LD+
Sbjct: 11 LKMDKETALEAADQSEIDKKAAEDKSKQHDDALIQMQKKLKGTEDELDK 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,332,506
Number of Sequences: 1393205
Number of extensions: 9591802
Number of successful extensions: 25528
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 24593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25467
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
