Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015880A_C01 KMC015880A_c01
(765 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC34417.1| Germin-like protein [Pisum sativum] 218 1e-55
sp|Q9ZRA4|ABPA_PRUPE Auxin-binding protein ABP19a precursor gi|4... 207 1e-52
sp|P46271|GLP1_BRANA Germin-like protein 1 precursor gi|7447347|... 207 2e-52
ref|NP_177405.1| germin-like protein; protein id: At1g72610.1, s... 202 3e-51
gb|AAB51750.1| germin-like protein [Arabidopsis thaliana] 202 3e-51
>emb|CAC34417.1| Germin-like protein [Pisum sativum]
Length = 211
Score = 218 bits (554), Expect = 1e-55
Identities = 106/143 (74%), Positives = 123/143 (85%)
Frame = -3
Query: 763 AAVTPAFVGQFPGVNGLGLSAARLDIGPGGVIPLHTHPGANELLIVTQGHITAGFISSAS 584
AAVTPAF QFPGVNGLG+S ARLD+ PGGVIPLHTHPGA+E+L+V QG I AGF+SSA+
Sbjct: 69 AAVTPAFDAQFPGVNGLGISIARLDLAPGGVIPLHTHPGASEVLVVIQGTILAGFVSSAN 128
Query: 583 TVYIKTLKKGELMVFPQGLLHFQVAAGKTKAIGFAIFSSASPGLQILDFALFASNFSTPL 404
VY+KTL KG++MVFPQGLLHFQ+ +G++ A+ F FSSA+PGLQILDFALF S+F T L
Sbjct: 129 VVYLKTLNKGDVMVFPQGLLHFQINSGRSNALAFVSFSSANPGLQILDFALFKSDFPTEL 188
Query: 403 ITKTTFLDPALVKKLKGVLGGSG 335
IT TTFLD LVKKLKGVLGGSG
Sbjct: 189 ITATTFLDAGLVKKLKGVLGGSG 211
>sp|Q9ZRA4|ABPA_PRUPE Auxin-binding protein ABP19a precursor gi|4098517|gb|AAD00295.1|
auxin-binding protein ABP19 [Prunus persica]
Length = 209
Score = 207 bits (527), Expect = 1e-52
Identities = 101/142 (71%), Positives = 118/142 (82%)
Frame = -3
Query: 763 AAVTPAFVGQFPGVNGLGLSAARLDIGPGGVIPLHTHPGANELLIVTQGHITAGFISSAS 584
AAVTPAF QFPGVNGLG+S ARLD+GPGGVIP HTHPGA+E+L+V QG I AGF++S +
Sbjct: 67 AAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDN 126
Query: 583 TVYIKTLKKGELMVFPQGLLHFQVAAGKTKAIGFAIFSSASPGLQILDFALFASNFSTPL 404
T Y+KTLKKG++MVFPQGLLHFQV G T A+ F FSS SPGLQILDFALF ++ T L
Sbjct: 127 TPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLPTEL 186
Query: 403 ITKTTFLDPALVKKLKGVLGGS 338
I +TTFLD A +KKLKGVLGG+
Sbjct: 187 IAQTTFLDAAQIKKLKGVLGGT 208
>sp|P46271|GLP1_BRANA Germin-like protein 1 precursor gi|7447347|pir||T07854 germin-like
protein (clone BnC4) - rape gi|914911|gb|AAA86365.1|
germin-like protein
Length = 207
Score = 207 bits (526), Expect = 2e-52
Identities = 101/143 (70%), Positives = 118/143 (81%)
Frame = -3
Query: 763 AAVTPAFVGQFPGVNGLGLSAARLDIGPGGVIPLHTHPGANELLIVTQGHITAGFISSAS 584
AAVTP FV QFP +NGLG+S ARLD+ P GVIP+HTHPGA+E+L V G ITAGFISSA+
Sbjct: 65 AAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSAN 124
Query: 583 TVYIKTLKKGELMVFPQGLLHFQVAAGKTKAIGFAIFSSASPGLQILDFALFASNFSTPL 404
+VY++TLK G++MVFPQGLLHFQ+ AGKT A FSSASPGLQILDFALFA+ ST L
Sbjct: 125 SVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANTLSTEL 184
Query: 403 ITKTTFLDPALVKKLKGVLGGSG 335
++ TTFL PA VK LKGVLGG+G
Sbjct: 185 VSATTFLPPATVKTLKGVLGGTG 207
>ref|NP_177405.1| germin-like protein; protein id: At1g72610.1, supported by cDNA:
20068., supported by cDNA: gi_17473702, supported by
cDNA: gi_1755155, supported by cDNA: gi_1755157,
supported by cDNA: gi_1755169, supported by cDNA:
gi_1755171, supported by cDNA: gi_1755179, supported by
cDNA: gi_1755189, supported by cDNA: gi_1934727,
supported by cDNA: gi_20148494 [Arabidopsis thaliana]
gi|18202460|sp|P94040|GL31_ARATH Germin-like protein
subfamily 3 member 1 precursor (AtGER1) (At-GERM1)
(AtGLP1) gi|25313332|pir||F96750 germin-like protein,
70589-71215 [imported] - Arabidopsis thaliana
gi|1755156|gb|AAB51567.1| germin-like protein
[Arabidopsis thaliana] gi|1755158|gb|AAB51568.1|
germin-like protein [Arabidopsis thaliana]
gi|1755170|gb|AAB51574.1| germin-like protein
[Arabidopsis thaliana] gi|1755172|gb|AAB51575.1|
germin-like protein [Arabidopsis thaliana]
gi|1755180|gb|AAB51579.1| germin-like protein
[Arabidopsis thaliana] gi|1755190|gb|AAB51584.1|
germin-like protein [Arabidopsis thaliana]
gi|1934728|gb|AAB51751.1| germin-like protein
[Arabidopsis thaliana] gi|4154285|gb|AAD05223.1|
germin-like protein 1 [Arabidopsis thaliana]
gi|4666248|dbj|BAA77207.1| germin-like protein precursor
[Arabidopsis thaliana]
gi|12323768|gb|AAG51848.1|AC010926_11 germin-like
protein; 70589-71215 [Arabidopsis thaliana]
gi|21554080|gb|AAM63161.1| germin-like protein
[Arabidopsis thaliana] gi|24417314|gb|AAN60267.1|
unknown [Arabidopsis thaliana]
Length = 208
Score = 202 bits (515), Expect = 3e-51
Identities = 98/143 (68%), Positives = 117/143 (81%)
Frame = -3
Query: 763 AAVTPAFVGQFPGVNGLGLSAARLDIGPGGVIPLHTHPGANELLIVTQGHITAGFISSAS 584
AAVTPAF QFPG+NGLGLS ARLD+ P GVIP+HTHPGA+E+L V G ITAGF+SSA+
Sbjct: 66 AAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSAN 125
Query: 583 TVYIKTLKKGELMVFPQGLLHFQVAAGKTKAIGFAIFSSASPGLQILDFALFASNFSTPL 404
VY++TLK G++MVFPQGLLHFQ+ AGK+ A F+SA+PGLQILDFALFA++ T L
Sbjct: 126 AVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTEL 185
Query: 403 ITKTTFLDPALVKKLKGVLGGSG 335
+ TTFLD VKKLKGVLGG+G
Sbjct: 186 VVGTTFLDATTVKKLKGVLGGTG 208
>gb|AAB51750.1| germin-like protein [Arabidopsis thaliana]
Length = 204
Score = 202 bits (515), Expect = 3e-51
Identities = 98/143 (68%), Positives = 117/143 (81%)
Frame = -3
Query: 763 AAVTPAFVGQFPGVNGLGLSAARLDIGPGGVIPLHTHPGANELLIVTQGHITAGFISSAS 584
AAVTPAF QFPG+NGLGLS ARLD+ P GVIP+HTHPGA+E+L V G ITAGF+SSA+
Sbjct: 62 AAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSAN 121
Query: 583 TVYIKTLKKGELMVFPQGLLHFQVAAGKTKAIGFAIFSSASPGLQILDFALFASNFSTPL 404
VY++TLK G++MVFPQGLLHFQ+ AGK+ A F+SA+PGLQILDFALFA++ T L
Sbjct: 122 AVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTEL 181
Query: 403 ITKTTFLDPALVKKLKGVLGGSG 335
+ TTFLD VKKLKGVLGG+G
Sbjct: 182 VVGTTFLDATTVKKLKGVLGGTG 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 648,627,024
Number of Sequences: 1393205
Number of extensions: 14403636
Number of successful extensions: 44938
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 42854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44797
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
