Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015870A_C01 KMC015870A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566645.1| expressed protein; protein id: At3g19770.1, sup... 39 0.022
gb|EAA28426.1| predicted protein [Neurospora crassa] 38 0.065
ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain cont... 38 0.065
pir||C32905 desmoplakin, desmosomal - bovine (fragment) 37 0.085
gb|AAL83557.1|AF414717_7 PA5285-like protein [Pseudomonas stutzeri] 37 0.11
>ref|NP_566645.1| expressed protein; protein id: At3g19770.1, supported by cDNA:
gi_15027906, supported by cDNA: gi_19310676 [Arabidopsis
thaliana] gi|15027907|gb|AAK76484.1| unknown protein
[Arabidopsis thaliana] gi|19310677|gb|AAL85069.1|
unknown protein [Arabidopsis thaliana]
Length = 520
Score = 39.3 bits (90), Expect = 0.022
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Frame = -1
Query: 460 YKQLVFKYVSLSKGLG-------------VSSTSNSQNNTQDHVESETTLDSSEGESVGA 320
YKQLVFKYV L+KGLG SS N+ ++DH S + + ++ E+ +
Sbjct: 376 YKQLVFKYVCLTKGLGDGTSLAPSSSPLQASSGFNTSKESEDHRRSSSDVQMTK-ETDRS 434
Query: 319 IDEPEKSIDSMEDSSEKVSPLEEAKSE 239
+D+ I ++ E V+ L + K E
Sbjct: 435 VDD---LIRALHGEGEDVNNLSDVKHE 458
>gb|EAA28426.1| predicted protein [Neurospora crassa]
Length = 471
Score = 37.7 bits (86), Expect = 0.065
Identities = 22/69 (31%), Positives = 33/69 (46%)
Frame = -1
Query: 409 SSTSNSQNNTQDHVESETTLDSSEGESVGAIDEPEKSIDSMEDSSEKVSPLEEAKSESDL 230
SS S+S +++ SE++ DSS +S D DS DSS ++ S+SD
Sbjct: 247 SSDSSSSDSSSSDSSSESSSDSSSSDSSSDSDSSSSDSDSSSDSSSDSDSSSDSDSDSDS 306
Query: 229 PQEEAVAPE 203
+ EA E
Sbjct: 307 SESEAEKKE 315
Score = 35.4 bits (80), Expect = 0.32
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +3
Query: 189 EGAAASGATASSCGKSDSLFASSRGETFSELSSIESIDFSGSSMAPTDSPSDESS 353
+ AAA +S SDS + S E+ S+ SS +S S SS + +DS SD SS
Sbjct: 238 KAAAAKKEESSDSSSSDSSSSDSSSESSSDSSSSDSSSDSDSSSSDSDSSSDSSS 292
>ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain containing protein
[Caenorhabditis elegans] gi|7504031|pir||T21064
hypothetical protein F53B7.5 - Caenorhabditis elegans
gi|3876064|emb|CAA96634.1| Hypothetical protein F53B7.5
[Caenorhabditis elegans] gi|3877441|emb|CAA96654.1|
Hypothetical protein F53B7.5 [Caenorhabditis elegans]
Length = 2761
Score = 37.7 bits (86), Expect = 0.065
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = -1
Query: 412 VSSTSNSQNNTQDHVESETTLDSSEGESVGAIDEPEKSIDSMEDSSEKVSPLEEAKSESD 233
+S T+ S +T E TTLDSS + G++ E S+ S DSS+ +PL+ + S S+
Sbjct: 263 ISLTTESMQSTTSSSEISTTLDSSS--TTGSVSSTE-SVTS--DSSDSTTPLDVSSSPSE 317
Query: 232 LPQEEAVAPEAAAPS 188
+ ++ P A+ S
Sbjct: 318 STESQSSTPSDASSS 332
>pir||C32905 desmoplakin, desmosomal - bovine (fragment)
Length = 388
Score = 37.4 bits (85), Expect = 0.085
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 192 GAAASGATASSCGKSDSLFASSRGETFSELSSIESIDFSGSSMAPTDSPSDESSVVS 362
G G +++ G SD +F SSR ET S++S+I SI + P +ESS ++
Sbjct: 81 GGIVGGGSSTGGGLSDDVFGSSRHETVSKISTISSIKNLTIRSSSLSEPLEESSPIA 137
>gb|AAL83557.1|AF414717_7 PA5285-like protein [Pseudomonas stutzeri]
Length = 109
Score = 37.0 bits (84), Expect = 0.11
Identities = 21/58 (36%), Positives = 32/58 (54%), Gaps = 4/58 (6%)
Frame = -1
Query: 349 DSSEGESVGAIDEPEKSIDSMEDSSEKVSPLEEAKSES----DLPQEEAVAPEAAAPS 188
D EGE + A D+ + S+D SE+ +P ++AK++S +LP EA E A S
Sbjct: 15 DEEEGEELNAADDGDDSLDEEGTDSERATPTKKAKAKSAEPDELPSLEAKQKEREAGS 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,240,103
Number of Sequences: 1393205
Number of extensions: 8229246
Number of successful extensions: 34058
Number of sequences better than 10.0: 196
Number of HSP's better than 10.0 without gapping: 30458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33812
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
