Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015867A_C01 KMC015867A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180066.1| putative steroid binding protein; protein id: A... 166 1e-40
gb|AAG13623.1|AC078840_14 putative steroid membrane binding prot... 112 3e-24
gb|AAD34616.1|AF153284_1 putative progesterone-binding protein h... 110 9e-24
ref|NP_200037.1| progesterone-binding protein-like; protein id: ... 110 1e-23
gb|AAG13629.1|AC078840_20 putative steroid membrane binding prot... 110 2e-23
>ref|NP_180066.1| putative steroid binding protein; protein id: At2g24940.1,
supported by cDNA: 10261. [Arabidopsis thaliana]
gi|25412264|pir||C84642 probable steroid binding protein
[imported] - Arabidopsis thaliana
gi|4559358|gb|AAD23019.1| putative steroid binding
protein [Arabidopsis thaliana]
gi|21536553|gb|AAM60885.1| putative steroid binding
protein [Arabidopsis thaliana]
gi|27311681|gb|AAO00806.1| putative steroid binding
protein [Arabidopsis thaliana]
Length = 100
Score = 166 bits (421), Expect = 1e-40
Identities = 78/100 (78%), Positives = 89/100 (89%)
Frame = -3
Query: 537 MEMTAQQLSQYNGTDPSKPIYVSVKGRVFDATTGKSFYGPGGAYAMFAGRDASRALAKMS 358
ME TA+QLSQYNGTD SKPIYV++KGRVFD TTGKSFYG GG Y+MFAG+DASRAL KMS
Sbjct: 1 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMS 60
Query: 357 KNEEDISPNLDGLSDKEIGVLNDWENKFVAKYPVVARLVS 238
KNEED+SP+L+GL++KEI LNDWE KF AKYPVV R+VS
Sbjct: 61 KNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100
>gb|AAG13623.1|AC078840_14 putative steroid membrane binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 265
Score = 112 bits (280), Expect = 3e-24
Identities = 49/97 (50%), Positives = 73/97 (74%)
Frame = -3
Query: 534 EMTAQQLSQYNGTDPSKPIYVSVKGRVFDATTGKSFYGPGGAYAMFAGRDASRALAKMSK 355
E+TA++L QY+G+DP KP+ +++KG+++D + + FYGPGG YA+FAG+DASRALAKMS
Sbjct: 120 EITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALAKMSF 179
Query: 354 NEEDISPNLDGLSDKEIGVLNDWENKFVAKYPVVARL 244
+D++ ++ GLS E+ L DWE KF +KY V +
Sbjct: 180 EPQDLTDDISGLSLLELSALQDWEYKFSSKYVKVGTI 216
>gb|AAD34616.1|AF153284_1 putative progesterone-binding protein homolog [Arabidopsis
thaliana] gi|21555444|gb|AAM63860.1|
progesterone-binding protein-like [Arabidopsis thaliana]
Length = 220
Score = 110 bits (276), Expect = 9e-24
Identities = 48/94 (51%), Positives = 71/94 (75%)
Frame = -3
Query: 534 EMTAQQLSQYNGTDPSKPIYVSVKGRVFDATTGKSFYGPGGAYAMFAGRDASRALAKMSK 355
E+T ++L QY+G+DP KP+ +++K +++D T + FYGPGG YA+FAG+DASRALAKMS
Sbjct: 74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 133
Query: 354 NEEDISPNLDGLSDKEIGVLNDWENKFVAKYPVV 253
E+D++ ++ GL E+ L DWE KF++KY V
Sbjct: 134 EEKDLTWDISGLGPFELDALQDWEYKFMSKYAKV 167
>ref|NP_200037.1| progesterone-binding protein-like; protein id: At5g52240.1,
supported by cDNA: 28003., supported by cDNA:
gi_15028112, supported by cDNA: gi_4960155 [Arabidopsis
thaliana] gi|8885537|dbj|BAA97467.1|
progesterone-binding protein-like [Arabidopsis thaliana]
gi|24030304|gb|AAN41322.1| putative progesterone-binding
protein [Arabidopsis thaliana]
Length = 220
Score = 110 bits (275), Expect = 1e-23
Identities = 48/94 (51%), Positives = 71/94 (75%)
Frame = -3
Query: 534 EMTAQQLSQYNGTDPSKPIYVSVKGRVFDATTGKSFYGPGGAYAMFAGRDASRALAKMSK 355
E+T ++L QY+G+DP KP+ +++K +++D T + FYGPGG YA+FAG+DASRALAKMS
Sbjct: 74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 133
Query: 354 NEEDISPNLDGLSDKEIGVLNDWENKFVAKYPVV 253
E+D++ ++ GL E+ L DWE KF++KY V
Sbjct: 134 EEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKV 167
>gb|AAG13629.1|AC078840_20 putative steroid membrane binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 232
Score = 110 bits (274), Expect = 2e-23
Identities = 46/91 (50%), Positives = 69/91 (75%)
Frame = -3
Query: 534 EMTAQQLSQYNGTDPSKPIYVSVKGRVFDATTGKSFYGPGGAYAMFAGRDASRALAKMSK 355
E++ ++L QY+G+DP KP+ +++KG+++D T + FYGPGG YA+FAG+DASRALAKMS
Sbjct: 73 EVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 132
Query: 354 NEEDISPNLDGLSDKEIGVLNDWENKFVAKY 262
+D++ ++ GL E+ L DWE KF+ KY
Sbjct: 133 EPQDLTGDISGLGPFELDALQDWEYKFMGKY 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,332,591
Number of Sequences: 1393205
Number of extensions: 11130732
Number of successful extensions: 55340
Number of sequences better than 10.0: 218
Number of HSP's better than 10.0 without gapping: 41053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49809
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
