Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015849A_C01 KMC015849A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_240117.1| hypothetical protein [Buchnera sp. APS] gi|1138... 39 0.039
ref|NP_172863.2| xyloglucan fucosyltransferase family; protein i... 34 0.96
ref|NP_172862.1| hypothetical protein [Arabidopsis thaliana] gi|... 34 0.96
ref|NP_281956.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-... 33 1.6
sp|Q9XI77|FUT9_ARATH Probable fucosyltransferase 9 (AtFUT9) gi|2... 33 1.6
>ref|NP_240117.1| hypothetical protein [Buchnera sp. APS]
gi|11387287|sp|P57380|Y293_BUCAI Hypothetical protein
BU293 gi|25403585|pir||C84964 hypothetical protein
[imported] - Buchnera sp. (strain APS)
gi|10038968|dbj|BAB13003.1| hypothetical protein
[Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
Length = 334
Score = 38.9 bits (89), Expect = 0.039
Identities = 20/41 (48%), Positives = 24/41 (57%)
Frame = +2
Query: 308 QKGQQTIPSKQHYISFHMKKNFTCSQSYIC*FISLSYLQKF 430
+K + IP K +YISF KK F SY FIS+S L KF
Sbjct: 73 KKNESNIPGKANYISFDKKKEFLFCSSYHSNFISVSPLNKF 113
>ref|NP_172863.2| xyloglucan fucosyltransferase family; protein id: At1g14110.1
[Arabidopsis thaliana]
Length = 907
Score = 34.3 bits (77), Expect = 0.96
Identities = 25/102 (24%), Positives = 42/102 (40%), Gaps = 12/102 (11%)
Frame = +3
Query: 126 CRTELFQAHGMNSTQLP--IVEYKNMYYVKPVLMFPSCF-------ILIQVLWIVWN--- 269
C + + H +NST I Y +Y + + F ++ QV W+V+N
Sbjct: 200 CYGTMLKNHAINSTTTESIIPSYLCLYLIHDYDDYDKMFFCESDQILIRQVPWLVFNSNL 259
Query: 270 YYIPVAKKCHGIDKKGNKQYPASNTIFHFT*RKTLHVLNPIY 395
Y+IP + +K +P T+FH R H N ++
Sbjct: 260 YFIPSLWLIPSFQSELSKLFPQKETVFHHLARYLFHPTNQVW 301
Score = 33.5 bits (75), Expect = 1.6
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Frame = +3
Query: 84 LHTEHDS*ILKYNTCRTELFQAHGMNSTQL-PIVEYKNMYYV-----KPVLMFPSCFILI 245
L+ + DS +++ C + + HG+NST + P Y ++++ K L
Sbjct: 655 LNDQLDSFNREHSRCYGTMLKNHGINSTSIIPSHLYLDIFHDSRDHDKKFFCEEDQAFLD 714
Query: 246 QVLWIVWN---YYIPVAKKCHGIDKKGNKQYPASNTIFHFT*RKTLHVLNPIYASS 404
+V W+V Y++P K K +P T+FH R H N ++ S
Sbjct: 715 KVTWLVVKSNLYFVPSLWMIPSFQTKLIKLFPQKETVFHHLARYLFHPTNQVWEYS 770
>ref|NP_172862.1| hypothetical protein [Arabidopsis thaliana]
gi|20138442|sp|Q9XI78|FUT8_ARATH Probable
fucosyltransferase 8 (AtFUT8) gi|25354694|pir||D86274
hypothetical protein F7A19.18 [imported] - Arabidopsis
thaliana gi|5080784|gb|AAD39294.1|AC007576_17
Hypothetical protein [Arabidopsis thaliana]
Length = 500
Score = 34.3 bits (77), Expect = 0.96
Identities = 25/102 (24%), Positives = 42/102 (40%), Gaps = 12/102 (11%)
Frame = +3
Query: 126 CRTELFQAHGMNSTQLP--IVEYKNMYYVKPVLMFPSCF-------ILIQVLWIVWN--- 269
C + + H +NST I Y +Y + + F ++ QV W+V+N
Sbjct: 184 CYGTMLKNHAINSTTTESIIPSYLCLYLIHDYDDYDKMFFCESDQILIRQVPWLVFNSNL 243
Query: 270 YYIPVAKKCHGIDKKGNKQYPASNTIFHFT*RKTLHVLNPIY 395
Y+IP + +K +P T+FH R H N ++
Sbjct: 244 YFIPSLWLIPSFQSELSKLFPQKETVFHHLARYLFHPTNQVW 285
>ref|NP_281956.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- ligase [Campylobacter jejuni]
gi|11347199|pir||C81351 probable
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
6.3.2.15) Cj0795c [imported] - Campylobacter jejuni
(strain NCTC 11168) gi|6968241|emb|CAB73060.1| putative
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
jejuni NCTC 11168]
Length = 475
Score = 33.5 bits (75), Expect = 1.6
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +1
Query: 343 LYFISHEEKLYMFSILYMLVHFPVIPTKILAHW*KG------FSSKNNVSFIFI*ESTAC 504
LYF+ L++ LY LV+F +I T IL W KG F+SK F+F+ A
Sbjct: 47 LYFLFIPYFLFLAFPLYSLVYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFVYNAI 106
Query: 505 F 507
F
Sbjct: 107 F 107
>sp|Q9XI77|FUT9_ARATH Probable fucosyltransferase 9 (AtFUT9) gi|25354695|pir||E86274
hypothetical protein F7A19.19 - Arabidopsis thaliana
gi|5080785|gb|AAD39295.1|AC007576_18 Hypothetical
protein [Arabidopsis thaliana]
Length = 435
Score = 33.5 bits (75), Expect = 1.6
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Frame = +3
Query: 84 LHTEHDS*ILKYNTCRTELFQAHGMNSTQL-PIVEYKNMYYV-----KPVLMFPSCFILI 245
L+ + DS +++ C + + HG+NST + P Y ++++ K L
Sbjct: 183 LNDQLDSFNREHSRCYGTMLKNHGINSTSIIPSHLYLDIFHDSRDHDKKFFCEEDQAFLD 242
Query: 246 QVLWIVWN---YYIPVAKKCHGIDKKGNKQYPASNTIFHFT*RKTLHVLNPIYASS 404
+V W+V Y++P K K +P T+FH R H N ++ S
Sbjct: 243 KVTWLVVKSNLYFVPSLWMIPSFQTKLIKLFPQKETVFHHLARYLFHPTNQVWEYS 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,832,474
Number of Sequences: 1393205
Number of extensions: 8871621
Number of successful extensions: 16959
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16946
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
