Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015848A_C01 KMC015848A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22755.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.44
pir||T11706 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 32 3.7
ref|NP_212872.1| valyl-tRNA synthetase (valS) [Borrelia burgdorf... 26 5.2
>gb|EAA22755.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 301
Score = 35.0 bits (79), Expect = 0.44
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 4/67 (5%)
Frame = +3
Query: 3 REITNLICMQPKEEKHENSLIYQ--ICLKIHGSIYR--SRIHKKGDGIFYYFKKQKNDTI 170
+EI L+C P+E K+ + L+ + + L+ H + S +HK DG Y KK N I
Sbjct: 58 KEINPLLCTDPEETKNASELMNEAIMLLQYHATSIEDYSLLHKHDDGSSEYIKKHGNADI 117
Query: 171 NSWQERM 191
+ + +M
Sbjct: 118 HKFIHKM 124
>pir||T11706 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Libythea
celtis mitochondrion (fragment)
gi|3133232|dbj|BAA28203.1| NADH dehydrogenase subunit 5
[Libythea celtis]
Length = 273
Score = 32.0 bits (71), Expect = 3.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 164 IILLFFKVVKDSIS---LFVYPRSVYATMNF*AYLIYKRIFVFFFFRLHAN 21
+ILLF V+ S+ +F YP +Y N +IY +F FF L +N
Sbjct: 207 LILLFMSVISGSLLSWLIFPYPYMIYLPFNMKMMVIYVSLFGMFFGYLMSN 257
>ref|NP_212872.1| valyl-tRNA synthetase (valS) [Borrelia burgdorferi]
gi|3915080|sp|O51680|SYV_BORBU Valyl-tRNA synthetase
(Valine--tRNA ligase) (VALRS) gi|7437647|pir||A70192
valine-tRNA ligase (EC 6.1.1.9) valS - Lyme disease
spirochete gi|2688666|gb|AAC67078.1| valyl-tRNA
synthetase (valS) [Borrelia burgdorferi B31]
Length = 875
Score = 26.2 bits (56), Expect(2) = 5.2
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 423 FWNLFCFLYLD-NGLSFSPQSL*LSSSLYYKITFKLKRSLM 304
FWN FC Y++ + + + +++ + + K+ F LK+SL+
Sbjct: 638 FWNDFCDWYIEISKIDLNNENVDIQNMAISKLLFFLKKSLL 678
Score = 23.9 bits (50), Expect(2) = 5.2
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -2
Query: 221 LKKILCVMSHHPFLPRINCIILLFFKVVKDSISLFVYP 108
LKK L ++ HPF+P + I F +D ++L YP
Sbjct: 673 LKKSLLIL--HPFIPFVTEKIYSEFAEKEDILALNEYP 708
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,545,796
Number of Sequences: 1393205
Number of extensions: 7853685
Number of successful extensions: 22446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22437
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
