KMC015841A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC015841A_C01 KMC015841A_c01
aatgaaaacatttcatataaaaTAATAAAGGAAGTAAAAACATTTAATAAAGGACGATAA
CGTTAATACTACAAAGAACTTATTTCCCCCACATATCTTTGGCTTCGGGGAAGGATAATA
GATGAATTGAAGAATGACAACAAAACAATTTTTAGCTATTGATTAAAGTCAGAGACTTTC
AAAAAAGAAAGAAAAAAAGATTACTGCGAGAGAGCTTCCCTTTGCTACCAACACAAATGG
AGTAAAACAAAACAAAACAAAAAAAGAAAAAGAAAATTGTTTCCTTTCATTTTGTTCTTG
TAATGACTATGTGAGTGAGATCTATTAGTGCTTTCCTTGACCTTCTTACTTCCTCATCAT
CACTCTCAGGTAATGAATCAATTGCTGCTGCCGCAAGGTTAGCATGCTTCATGGCTAGCT
CCTTTGTCCTCTGAATACCGCGACTTTTTCCAAGATACTCGAGAGCAAGATCAACATTCT
CAGGGTTTTCAAAGCCGTCCTCAACAATTGCACGCAACTGAGGGAACTCCTCCATCGCAA
ACAATATTGGAGCAGTAACAATTCCATGTCGAATGTCAGATAAAGAACCCTTTCCAAGnG
GAAGCTGATGTGCCTnGTGAAATCAAGCACATCATCTATTAATTGAAACGCCAAACCCAG
ATTTTTTCCATATTCAAACGCAAGCATTGCAACTTCTGCTGTTTGCCCCGCAAGGATGGC
TAATGCCTTGCAACTATTTGATATTAATGATGCAGTCTTGTAGTATGTCTTTTCCATATA
ATATTCCATGCTACAGCGTTGATCAGATGTTGTAGTCATTTGCATGGTCTCCCCTGTTAC
AAGATGCTCTACAACTTTTGCCAATAAAGATACAACCTCTGTGTTCTTTAAAGAGGCCAG
AGCGACACAAGCCCGCGAAAGCAAAAAATCCCCAGGCAATAATGGCAACTTATTGGCCAT
TACAAAATTTAGTGAACCAATGCCACGTCTAGTATCTGC


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC015841A_C01 KMC015841A_c01
         (999 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAN86061.1| geranylgeranyl diphosphate synthase [Citrus unshiu]    228  e-103
emb|CAC16851.1| geranyl diphosphate synthase [Citrus sinensis]        228  e-103
emb|CAC20852.1| geranyl diphosphat synthase [Quercus robur]           229  e-102
gb|AAM13005.1| putative trans-prenyltransferase [Arabidopsis tha...   207  3e-94
ref|NP_181010.2| geranyl diphosphate synthase (GPPS)(dimethylall...   207  3e-94

>gb|AAN86061.1| geranylgeranyl diphosphate synthase [Citrus unshiu]
          Length = 426

 Score =  228 bits (581), Expect(2) = e-103
 Identities = 114/128 (89%), Positives = 124/128 (96%)
 Frame = -1

Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
           ADTRRGIGSLNFVM NKL +L GDFLLSRACVALASLKNTEVV+LLA VVEHLVTGETMQ
Sbjct: 191 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 250

Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
           MTT+SDQRCSM+YYM+KTYYKTASLISNSCKA+A+LAGQTAEVA+LAF+YGKNLGLA+QL
Sbjct: 251 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 310

Query: 639 IDDVLDFT 616
           IDDVLDFT
Sbjct: 311 IDDVLDFT 318

 Score =  171 bits (433), Expect(2) = e-103
 Identities = 83/103 (80%), Positives = 97/103 (93%)
 Frame = -3

Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
           LGKGSLSDI+HGI+TAPILFAMEEFPQLR +VE GFE+  NVD+ALEYLGKSRGIQ+T+E
Sbjct: 324 LGKGSLSDIQHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 383

Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
           LA+KHANLAAAAIDSLPE++DE+VR+SR+AL+DLTH VITR K
Sbjct: 384 LAVKHANLAAAAIDSLPENNDEDVRKSRRALLDLTHRVITRNK 426

>emb|CAC16851.1| geranyl diphosphate synthase [Citrus sinensis]
          Length = 321

 Score =  228 bits (581), Expect(2) = e-103
 Identities = 114/128 (89%), Positives = 124/128 (96%)
 Frame = -1

Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
           ADTRRGIGSLNFVM NKL +L GDFLLSRACVALASLKNTEVV+LLA VVEHLVTGETMQ
Sbjct: 86  ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 145

Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
           MTT+SDQRCSM+YYM+KTYYKTASLISNSCKA+A+LAGQTAEVA+LAF+YGKNLGLA+QL
Sbjct: 146 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 205

Query: 639 IDDVLDFT 616
           IDDVLDFT
Sbjct: 206 IDDVLDFT 213

 Score =  170 bits (431), Expect(2) = e-103
 Identities = 83/103 (80%), Positives = 96/103 (92%)
 Frame = -3

Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
           LGKGSLSDIRHGI+TAPILFAMEEFPQLR +VE GFE+  NVD+ALEYLGKSRGIQ+T+E
Sbjct: 219 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 278

Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
           LA+KHANLAAAAIDSLPE++DE+V +SR+AL+DLTH VITR K
Sbjct: 279 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321

>emb|CAC20852.1| geranyl diphosphat synthase [Quercus robur]
          Length = 416

 Score =  229 bits (585), Expect(2) = e-102
 Identities = 115/128 (89%), Positives = 123/128 (95%)
 Frame = -1

Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
           ADTRRGIGSLNFVM NKL +L GDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ
Sbjct: 181 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 240

Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
           MTTT +QRCSMEYYM+KTYYKTASLISNSCKA+A+L GQT+EVAMLA+EYGKNLGLA+QL
Sbjct: 241 MTTTCEQRCSMEYYMQKTYYKTASLISNSCKAIALLGGQTSEVAMLAYEYGKNLGLAYQL 300

Query: 639 IDDVLDFT 616
           IDDVLDFT
Sbjct: 301 IDDVLDFT 308

 Score =  166 bits (420), Expect(2) = e-102
 Identities = 81/103 (78%), Positives = 95/103 (91%)
 Frame = -3

Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
           LGKGSLSDIRHGI+TAPILFAMEEFPQLR +V+ GF++P NVD+AL+YLGKSRGIQR +E
Sbjct: 314 LGKGSLSDIRHGIITAPILFAMEEFPQLREVVDRGFDDPANVDVALDYLGKSRGIQRARE 373

Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
           LA KHAN+AA AIDSLPES+DE+VR+SR+AL+DLT  VITRTK
Sbjct: 374 LAKKHANIAAEAIDSLPESNDEDVRKSRRALLDLTERVITRTK 416

>gb|AAM13005.1| putative trans-prenyltransferase [Arabidopsis thaliana]
          Length = 423

 Score =  207 bits (526), Expect(2) = 3e-94
 Identities = 101/128 (78%), Positives = 119/128 (92%)
 Frame = -1

Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
           ADTRRG+GSLN VM NK+ +L GDFLLSRAC ALA+LKNTEVV+LLA  VEHLVTGETM+
Sbjct: 188 ADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETME 247

Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
           +T++++QR SM+YYM+KTYYKTASLISNSCKA+A+L GQTAEVA+LAFEYG+NLGLAFQL
Sbjct: 248 ITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQL 307

Query: 639 IDDVLDFT 616
           IDD+LDFT
Sbjct: 308 IDDILDFT 315

 Score =  161 bits (408), Expect(2) = 3e-94
 Identities = 79/103 (76%), Positives = 94/103 (90%)
 Frame = -3

Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
           LGKGSLSDIRHG++TAPILFAMEEFPQLR +V+   ++P NVD+ALEYLGKS+GIQR +E
Sbjct: 321 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 380

Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
           LAM+HANLAAAAI SLPE+D+E+V+RSR+ALIDLTH VITR K
Sbjct: 381 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 423

>ref|NP_181010.2| geranyl diphosphate synthase (GPPS)(dimethylallyltransferase);
           protein id: At2g34630.1 [Arabidopsis thaliana]
          Length = 422

 Score =  207 bits (526), Expect(2) = 3e-94
 Identities = 101/128 (78%), Positives = 119/128 (92%)
 Frame = -1

Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
           ADTRRG+GSLN VM NK+ +L GDFLLSRAC ALA+LKNTEVV+LLA  VEHLVTGETM+
Sbjct: 187 ADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETME 246

Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
           +T++++QR SM+YYM+KTYYKTASLISNSCKA+A+L GQTAEVA+LAFEYG+NLGLAFQL
Sbjct: 247 ITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQL 306

Query: 639 IDDVLDFT 616
           IDD+LDFT
Sbjct: 307 IDDILDFT 314

 Score =  161 bits (408), Expect(2) = 3e-94
 Identities = 79/103 (76%), Positives = 94/103 (90%)
 Frame = -3

Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
           LGKGSLSDIRHG++TAPILFAMEEFPQLR +V+   ++P NVD+ALEYLGKS+GIQR +E
Sbjct: 320 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 379

Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
           LAM+HANLAAAAI SLPE+D+E+V+RSR+ALIDLTH VITR K
Sbjct: 380 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 422

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 821,501,863
Number of Sequences: 1393205
Number of extensions: 17671932
Number of successful extensions: 54040
Number of sequences better than 10.0: 404
Number of HSP's better than 10.0 without gapping: 49552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53581
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57393820016
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MWM163h03_f AV767264 1 391
2 MFB001c07_f BP033955 23 584
3 MFB073g06_f BP039335 43 452
4 MF042e11_f BP030500 494 999




Lotus japonicus
Kazusa DNA Research Institute