KMC015841A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC015841A_C01 KMC015841A_c01
aatgaaaacatttcatataaaaTAATAAAGGAAGTAAAAACATTTAATAAAGGACGATAA
CGTTAATACTACAAAGAACTTATTTCCCCCACATATCTTTGGCTTCGGGGAAGGATAATA
GATGAATTGAAGAATGACAACAAAACAATTTTTAGCTATTGATTAAAGTCAGAGACTTTC
AAAAAAGAAAGAAAAAAAGATTACTGCGAGAGAGCTTCCCTTTGCTACCAACACAAATGG
AGTAAAACAAAACAAAACAAAAAAAGAAAAAGAAAATTGTTTCCTTTCATTTTGTTCTTG
TAATGACTATGTGAGTGAGATCTATTAGTGCTTTCCTTGACCTTCTTACTTCCTCATCAT
CACTCTCAGGTAATGAATCAATTGCTGCTGCCGCAAGGTTAGCATGCTTCATGGCTAGCT
CCTTTGTCCTCTGAATACCGCGACTTTTTCCAAGATACTCGAGAGCAAGATCAACATTCT
CAGGGTTTTCAAAGCCGTCCTCAACAATTGCACGCAACTGAGGGAACTCCTCCATCGCAA
ACAATATTGGAGCAGTAACAATTCCATGTCGAATGTCAGATAAAGAACCCTTTCCAAGnG
GAAGCTGATGTGCCTnGTGAAATCAAGCACATCATCTATTAATTGAAACGCCAAACCCAG
ATTTTTTCCATATTCAAACGCAAGCATTGCAACTTCTGCTGTTTGCCCCGCAAGGATGGC
TAATGCCTTGCAACTATTTGATATTAATGATGCAGTCTTGTAGTATGTCTTTTCCATATA
ATATTCCATGCTACAGCGTTGATCAGATGTTGTAGTCATTTGCATGGTCTCCCCTGTTAC
AAGATGCTCTACAACTTTTGCCAATAAAGATACAACCTCTGTGTTCTTTAAAGAGGCCAG
AGCGACACAAGCCCGCGAAAGCAAAAAATCCCCAGGCAATAATGGCAACTTATTGGCCAT
TACAAAATTTAGTGAACCAATGCCACGTCTAGTATCTGC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015841A_C01 KMC015841A_c01
(999 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN86061.1| geranylgeranyl diphosphate synthase [Citrus unshiu] 228 e-103
emb|CAC16851.1| geranyl diphosphate synthase [Citrus sinensis] 228 e-103
emb|CAC20852.1| geranyl diphosphat synthase [Quercus robur] 229 e-102
gb|AAM13005.1| putative trans-prenyltransferase [Arabidopsis tha... 207 3e-94
ref|NP_181010.2| geranyl diphosphate synthase (GPPS)(dimethylall... 207 3e-94
>gb|AAN86061.1| geranylgeranyl diphosphate synthase [Citrus unshiu]
Length = 426
Score = 228 bits (581), Expect(2) = e-103
Identities = 114/128 (89%), Positives = 124/128 (96%)
Frame = -1
Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
ADTRRGIGSLNFVM NKL +L GDFLLSRACVALASLKNTEVV+LLA VVEHLVTGETMQ
Sbjct: 191 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 250
Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
MTT+SDQRCSM+YYM+KTYYKTASLISNSCKA+A+LAGQTAEVA+LAF+YGKNLGLA+QL
Sbjct: 251 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 310
Query: 639 IDDVLDFT 616
IDDVLDFT
Sbjct: 311 IDDVLDFT 318
Score = 171 bits (433), Expect(2) = e-103
Identities = 83/103 (80%), Positives = 97/103 (93%)
Frame = -3
Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
LGKGSLSDI+HGI+TAPILFAMEEFPQLR +VE GFE+ NVD+ALEYLGKSRGIQ+T+E
Sbjct: 324 LGKGSLSDIQHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 383
Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
LA+KHANLAAAAIDSLPE++DE+VR+SR+AL+DLTH VITR K
Sbjct: 384 LAVKHANLAAAAIDSLPENNDEDVRKSRRALLDLTHRVITRNK 426
>emb|CAC16851.1| geranyl diphosphate synthase [Citrus sinensis]
Length = 321
Score = 228 bits (581), Expect(2) = e-103
Identities = 114/128 (89%), Positives = 124/128 (96%)
Frame = -1
Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
ADTRRGIGSLNFVM NKL +L GDFLLSRACVALASLKNTEVV+LLA VVEHLVTGETMQ
Sbjct: 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 145
Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
MTT+SDQRCSM+YYM+KTYYKTASLISNSCKA+A+LAGQTAEVA+LAF+YGKNLGLA+QL
Sbjct: 146 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 205
Query: 639 IDDVLDFT 616
IDDVLDFT
Sbjct: 206 IDDVLDFT 213
Score = 170 bits (431), Expect(2) = e-103
Identities = 83/103 (80%), Positives = 96/103 (92%)
Frame = -3
Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
LGKGSLSDIRHGI+TAPILFAMEEFPQLR +VE GFE+ NVD+ALEYLGKSRGIQ+T+E
Sbjct: 219 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 278
Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
LA+KHANLAAAAIDSLPE++DE+V +SR+AL+DLTH VITR K
Sbjct: 279 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321
>emb|CAC20852.1| geranyl diphosphat synthase [Quercus robur]
Length = 416
Score = 229 bits (585), Expect(2) = e-102
Identities = 115/128 (89%), Positives = 123/128 (95%)
Frame = -1
Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
ADTRRGIGSLNFVM NKL +L GDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ
Sbjct: 181 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 240
Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
MTTT +QRCSMEYYM+KTYYKTASLISNSCKA+A+L GQT+EVAMLA+EYGKNLGLA+QL
Sbjct: 241 MTTTCEQRCSMEYYMQKTYYKTASLISNSCKAIALLGGQTSEVAMLAYEYGKNLGLAYQL 300
Query: 639 IDDVLDFT 616
IDDVLDFT
Sbjct: 301 IDDVLDFT 308
Score = 166 bits (420), Expect(2) = e-102
Identities = 81/103 (78%), Positives = 95/103 (91%)
Frame = -3
Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
LGKGSLSDIRHGI+TAPILFAMEEFPQLR +V+ GF++P NVD+AL+YLGKSRGIQR +E
Sbjct: 314 LGKGSLSDIRHGIITAPILFAMEEFPQLREVVDRGFDDPANVDVALDYLGKSRGIQRARE 373
Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
LA KHAN+AA AIDSLPES+DE+VR+SR+AL+DLT VITRTK
Sbjct: 374 LAKKHANIAAEAIDSLPESNDEDVRKSRRALLDLTERVITRTK 416
>gb|AAM13005.1| putative trans-prenyltransferase [Arabidopsis thaliana]
Length = 423
Score = 207 bits (526), Expect(2) = 3e-94
Identities = 101/128 (78%), Positives = 119/128 (92%)
Frame = -1
Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
ADTRRG+GSLN VM NK+ +L GDFLLSRAC ALA+LKNTEVV+LLA VEHLVTGETM+
Sbjct: 188 ADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETME 247
Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
+T++++QR SM+YYM+KTYYKTASLISNSCKA+A+L GQTAEVA+LAFEYG+NLGLAFQL
Sbjct: 248 ITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQL 307
Query: 639 IDDVLDFT 616
IDD+LDFT
Sbjct: 308 IDDILDFT 315
Score = 161 bits (408), Expect(2) = 3e-94
Identities = 79/103 (76%), Positives = 94/103 (90%)
Frame = -3
Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
LGKGSLSDIRHG++TAPILFAMEEFPQLR +V+ ++P NVD+ALEYLGKS+GIQR +E
Sbjct: 321 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 380
Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
LAM+HANLAAAAI SLPE+D+E+V+RSR+ALIDLTH VITR K
Sbjct: 381 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 423
>ref|NP_181010.2| geranyl diphosphate synthase (GPPS)(dimethylallyltransferase);
protein id: At2g34630.1 [Arabidopsis thaliana]
Length = 422
Score = 207 bits (526), Expect(2) = 3e-94
Identities = 101/128 (78%), Positives = 119/128 (92%)
Frame = -1
Query: 999 ADTRRGIGSLNFVMANKLPLLPGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQ 820
ADTRRG+GSLN VM NK+ +L GDFLLSRAC ALA+LKNTEVV+LLA VEHLVTGETM+
Sbjct: 187 ADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETME 246
Query: 819 MTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQL 640
+T++++QR SM+YYM+KTYYKTASLISNSCKA+A+L GQTAEVA+LAFEYG+NLGLAFQL
Sbjct: 247 ITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQL 306
Query: 639 IDDVLDFT 616
IDD+LDFT
Sbjct: 307 IDDILDFT 314
Score = 161 bits (408), Expect(2) = 3e-94
Identities = 79/103 (76%), Positives = 94/103 (90%)
Frame = -3
Query: 598 LGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKE 419
LGKGSLSDIRHG++TAPILFAMEEFPQLR +V+ ++P NVD+ALEYLGKS+GIQR +E
Sbjct: 320 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 379
Query: 418 LAMKHANLAAAAIDSLPESDDEEVRRSRKALIDLTHIVITRTK 290
LAM+HANLAAAAI SLPE+D+E+V+RSR+ALIDLTH VITR K
Sbjct: 380 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 422
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 821,501,863
Number of Sequences: 1393205
Number of extensions: 17671932
Number of successful extensions: 54040
Number of sequences better than 10.0: 404
Number of HSP's better than 10.0 without gapping: 49552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53581
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57393820016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MWM163h03_f |
AV767264 |
1 |
391 |
2 |
MFB001c07_f |
BP033955 |
23 |
584 |
3 |
MFB073g06_f |
BP039335 |
43 |
452 |
4 |
MF042e11_f |
BP030500 |
494 |
999 |
|
Lotus japonicus
Kazusa DNA Research Institute