Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015831A_C01 KMC015831A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF97823.1|AC034107_6 ESTs gb|AI998082, gb|AV440637, gb|AV442... 137 9e-32
ref|NP_564046.1| expressed protein; protein id: At1g18060.1, sup... 137 9e-32
dbj|BAB17163.1| P0698A04.24 [Oryza sativa (japonica cultivar-gro... 126 2e-28
gb|ZP_00107602.1| hypothetical protein [Nostoc punctiforme] 44 0.001
ref|ZP_00074314.1| hypothetical protein [Trichodesmium erythraeu... 40 0.025
>gb|AAF97823.1|AC034107_6 ESTs gb|AI998082, gb|AV440637, gb|AV442187, gb|AV526496 come from
this gene. [Arabidopsis thaliana]
Length = 225
Score = 137 bits (345), Expect = 9e-32
Identities = 62/79 (78%), Positives = 70/79 (88%), Gaps = 1/79 (1%)
Frame = -2
Query: 556 LTFEGRLSWKNRILAFIFENLRIKIGPLKPLQISLGKKEDTE-PNTKSPFFIWFYVDEEI 380
LTFEGR SWKNRILAF+FE +RIKIGPL PL+ SLGKK+ E P+ K PFFIWFY+DEEI
Sbjct: 145 LTFEGRFSWKNRILAFVFEQIRIKIGPLDPLEFSLGKKDAVEEPSNKDPFFIWFYIDEEI 204
Query: 379 AVARGRSGGTAFWCRCRQV 323
AVARGRSGGTAFWCRCR++
Sbjct: 205 AVARGRSGGTAFWCRCRRI 223
>ref|NP_564046.1| expressed protein; protein id: At1g18060.1, supported by cDNA:
gi_15081663, supported by cDNA: gi_20147166 [Arabidopsis
thaliana] gi|25373014|pir||A86316 protein T10O22.3
[imported] - Arabidopsis thaliana
gi|8671786|gb|AAF78392.1|AC069551_25 T10O22.3
[Arabidopsis thaliana] gi|15081664|gb|AAK82487.1|
AT1g18060/T10F20.23 [Arabidopsis thaliana]
gi|20147167|gb|AAM10300.1| AT1g18060/T10F20.23
[Arabidopsis thaliana]
Length = 226
Score = 137 bits (345), Expect = 9e-32
Identities = 62/79 (78%), Positives = 70/79 (88%), Gaps = 1/79 (1%)
Frame = -2
Query: 556 LTFEGRLSWKNRILAFIFENLRIKIGPLKPLQISLGKKEDTE-PNTKSPFFIWFYVDEEI 380
LTFEGR SWKNRILAF+FE +RIKIGPL PL+ SLGKK+ E P+ K PFFIWFY+DEEI
Sbjct: 146 LTFEGRFSWKNRILAFVFEQIRIKIGPLDPLEFSLGKKDAVEEPSNKDPFFIWFYIDEEI 205
Query: 379 AVARGRSGGTAFWCRCRQV 323
AVARGRSGGTAFWCRCR++
Sbjct: 206 AVARGRSGGTAFWCRCRRI 224
>dbj|BAB17163.1| P0698A04.24 [Oryza sativa (japonica cultivar-group)]
gi|12697611|dbj|BAB07940.2| P0684C01.1 [Oryza sativa
(japonica cultivar-group)]
Length = 254
Score = 126 bits (316), Expect = 2e-28
Identities = 57/79 (72%), Positives = 67/79 (84%), Gaps = 1/79 (1%)
Frame = -2
Query: 556 LTFEGRLSWKNRILAFIFENLRIKIGPLKPLQISLGKKED-TEPNTKSPFFIWFYVDEEI 380
LTFEGRLSWK +ILAFIFE +RIK+GP PL+ISLG D EP+TK PFF+WFYVDEEI
Sbjct: 175 LTFEGRLSWKKKILAFIFERVRIKVGPFGPLEISLGGGNDGREPSTKDPFFVWFYVDEEI 234
Query: 379 AVARGRSGGTAFWCRCRQV 323
AVA+GR GG A+WCRC++V
Sbjct: 235 AVAQGRGGGVAYWCRCKRV 253
>gb|ZP_00107602.1| hypothetical protein [Nostoc punctiforme]
Length = 206
Score = 44.3 bits (103), Expect = 0.001
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = -2
Query: 556 LTFEGRLSWKNRILAFIFENLRIKI-GPL---KPLQISLGKKED--TEPNTKSPFFIWFY 395
LT + + K +LAF F + I + G + +P++ + ED +P + PFF +F
Sbjct: 125 LTGPVQYTGKKNLLAFDFNQMLISLFGRVVYNRPIRSGKVQTEDFYNQPIAQLPFFAFFL 184
Query: 394 VDEEIAVARGRSGGTAFWCR 335
V ++ ARGR GG AFW R
Sbjct: 185 VTKDFIAARGRGGGLAFWIR 204
>ref|ZP_00074314.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 202
Score = 39.7 bits (91), Expect = 0.025
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 6/69 (8%)
Frame = -2
Query: 529 KNRILAFIFENLRIKIGPLKPLQ--ISLGKKEDT----EPNTKSPFFIWFYVDEEIAVAR 368
+ ILAF F + +K+ +K I GK+ + E K FF +F + E+ AR
Sbjct: 129 RKNILAFDFTKITVKLFGIKLYSGYIRGGKETENKFLKETVAKQAFFAYFLIKEKFIAAR 188
Query: 367 GRSGGTAFW 341
GR GG A W
Sbjct: 189 GRGGGLAIW 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,381,233
Number of Sequences: 1393205
Number of extensions: 9800751
Number of successful extensions: 23874
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23855
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
