Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015824A_C01 KMC015824A_c01
(682 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194730.1| putative protein; protein id: At4g30010.1, supp... 114 9e-25
ref|NP_014050.1| Hypothetical ORF; Ymr317wp [Saccharomyces cerev... 35 0.95
ref|NP_372735.1| hypothetical protein [Staphylococcus aureus sub... 35 0.95
pir||S59310 probable membrane protein YMR317w - yeast (Saccharom... 35 0.95
ref|NP_057369.1| Kruppel-like factor 12, isoform b; KLF12 zinc f... 32 6.2
>ref|NP_194730.1| putative protein; protein id: At4g30010.1, supported by cDNA:
2891., supported by cDNA: gi_14190500, supported by
cDNA: gi_15809751 [Arabidopsis thaliana]
gi|7486514|pir||T08977 hypothetical protein F6G3.40 -
Arabidopsis thaliana gi|4938477|emb|CAB43836.1| putative
protein [Arabidopsis thaliana]
gi|7269901|emb|CAB80994.1| putative protein [Arabidopsis
thaliana] gi|14190501|gb|AAK55731.1|AF380650_1
AT4g30010/F6G3_40 [Arabidopsis thaliana]
gi|15809752|gb|AAL06804.1| AT4g30010/F6G3_40
[Arabidopsis thaliana] gi|21555729|gb|AAM63922.1|
unknown [Arabidopsis thaliana]
Length = 90
Score = 114 bits (286), Expect = 9e-25
Identities = 53/88 (60%), Positives = 67/88 (75%)
Frame = -2
Query: 651 MAMR*FYNEIKGKKVTEIPEHVKPMLSFSYIRNSIKRGLDNYCEKYIETSSPEPLFHVCY 472
MA+R Y+EI+GKKVTE+P ++K S ++ S+KRGLDNY EKYI+TSS +P+ H+C+
Sbjct: 1 MALRRVYSEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60
Query: 471 GGMIFSYLVNLPKERRHLEHMQAHANAH 388
GM FSYLV LP ERRHLEH Q HA H
Sbjct: 61 YGMAFSYLVALPNERRHLEHQQ-HAKEH 87
>ref|NP_014050.1| Hypothetical ORF; Ymr317wp [Saccharomyces cerevisiae]
gi|2497227|sp|Q04893|YM96_YEAST HYPOTHETICAL 113.1 KD
PROTEIN IN PRE5-FET4 INTERGENIC REGION
gi|1072409|emb|CAA90835.1| unknown [Saccharomyces
cerevisiae]
Length = 1140
Score = 35.0 bits (79), Expect = 0.95
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = -3
Query: 572 PSATFGTPSSEAWTITARSTSKPVPLSLSSMSAMAA*SSPTLLISLRSAAISSTCRRTLM 393
PSAT + SSEA + T+ S S PL+ SS+ + A SS + ++S S A SST
Sbjct: 265 PSATSSSVSSEASSSTSSSVSSEAPLATSSVVSSEAPSSTSSVVS--SEAPSSTSSSVSS 322
Query: 392 LIIDSNSGS 366
I + S S
Sbjct: 323 EISSTTSSS 331
>ref|NP_372735.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15927791|ref|NP_375324.1| hypothetical protein
[Staphylococcus aureus subsp. aureus N315]
gi|25375606|pir||F90017 hypothetical protein [imported]
- Staphylococcus aureus (strain N315)
gi|13702011|dbj|BAB43303.1| hypothetical protein
[Staphylococcus aureus subsp. aureus N315]
gi|14247984|dbj|BAB58373.1| hypothetical protein
[Staphylococcus aureus subsp. aureus Mu50]
Length = 215
Score = 35.0 bits (79), Expect = 0.95
Identities = 20/59 (33%), Positives = 28/59 (46%)
Frame = +1
Query: 181 VSSSFIHSTTFKCKEIEYCIK*NLFYHKQ*NTLKLTVSFCLDFSVFKTKKIKQANHLHF 357
+S SF++S +EI IK +Y+ Q NT K + FC D + Q N HF
Sbjct: 40 LSQSFLNSNNVIKQEIIKIIKDEYYYYDQENTKKYLIKFCQDLIEHIKEHRNQINDCHF 98
>pir||S59310 probable membrane protein YMR317w - yeast (Saccharomyces
cerevisiae)
Length = 1104
Score = 35.0 bits (79), Expect = 0.95
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = -3
Query: 572 PSATFGTPSSEAWTITARSTSKPVPLSLSSMSAMAA*SSPTLLISLRSAAISSTCRRTLM 393
PSAT + SSEA + T+ S S PL+ SS+ + A SS + ++S S A SST
Sbjct: 265 PSATSSSVSSEASSSTSSSVSSEAPLATSSVVSSEAPSSTSSVVS--SEAPSSTSSSVSS 322
Query: 392 LIIDSNSGS 366
I + S S
Sbjct: 323 EISSTTSSS 331
>ref|NP_057369.1| Kruppel-like factor 12, isoform b; KLF12 zinc finger
transcriptional repressor; AP-2rep transcription factor;
AP-2 repressor [Homo sapiens]
gi|6523807|gb|AAF14863.1|AF113122_1 AP-2rep
transcription factor [Homo sapiens]
gi|6841466|gb|AAF29086.1|AF161471_1 HSPC122 [Homo
sapiens]
Length = 269
Score = 32.3 bits (72), Expect = 6.2
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = -3
Query: 584 SRCCPSATFGTPSSEAWTITARSTSKPVPLSLSSMSAMAA*SSPTLLISLRSAAISST 411
+R P+A +P S +TA S S P S SS S+ SSPT++ S+ SA+ SST
Sbjct: 89 ARTSPTAVSSSPVS----MTA-SASSPSSTSTSSSSSSRLASSPTVITSVSSASSSST 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,438,974
Number of Sequences: 1393205
Number of extensions: 11397969
Number of successful extensions: 25723
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25698
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
