Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015801A_C01 KMC015801A_c01
(812 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568573.1| putative protein; protein id: At5g39790.1, supp... 165 6e-40
gb|AAK74003.1| AT5g39790/MKM21_80 [Arabidopsis thaliana] gi|1697... 165 6e-40
ref|NP_173613.1| polyprotein, putative; protein id: At1g21945.1 ... 69 6e-13
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana] 69 6e-13
ref|NP_191692.1| copia-type polyprotein; protein id: At3g61330.1... 69 7e-13
>ref|NP_568573.1| putative protein; protein id: At5g39790.1, supported by cDNA:
gi_16974326 [Arabidopsis thaliana]
Length = 142
Score = 165 bits (418), Expect = 6e-40
Identities = 76/105 (72%), Positives = 94/105 (89%)
Frame = -1
Query: 812 ARLEAVHEQLKEQIKDVGAAQSKQVSVFWVGMAESVQVMGTFDGWSQGEHLSPEYTGSYT 633
+RL+AV +++KEQIK V AAQSK+V VFW+GMAESVQVMG+FDGWSQ E LSPEY+ +T
Sbjct: 38 SRLDAVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFT 97
Query: 632 RFSTTLMLRPGRYEIKFLVDGEWKLSPEFPLTGEGLTKNNLLIVE 498
+FSTTL LRPGRYE+KFLVDGEW++SPEFP +GEGL +NN+L+VE
Sbjct: 98 KFSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVVE 142
>gb|AAK74003.1| AT5g39790/MKM21_80 [Arabidopsis thaliana]
gi|16974327|gb|AAL31148.1| AT5g39790/MKM21_80
[Arabidopsis thaliana]
Length = 277
Score = 165 bits (418), Expect = 6e-40
Identities = 76/105 (72%), Positives = 94/105 (89%)
Frame = -1
Query: 812 ARLEAVHEQLKEQIKDVGAAQSKQVSVFWVGMAESVQVMGTFDGWSQGEHLSPEYTGSYT 633
+RL+AV +++KEQIK V AAQSK+V VFW+GMAESVQVMG+FDGWSQ E LSPEY+ +T
Sbjct: 173 SRLDAVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFT 232
Query: 632 RFSTTLMLRPGRYEIKFLVDGEWKLSPEFPLTGEGLTKNNLLIVE 498
+FSTTL LRPGRYE+KFLVDGEW++SPEFP +GEGL +NN+L+VE
Sbjct: 233 KFSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVVE 277
>ref|NP_173613.1| polyprotein, putative; protein id: At1g21945.1 [Arabidopsis thaliana]
Length = 1311
Score = 69.3 bits (168), Expect(2) = 6e-13
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 17/126 (13%)
Frame = +1
Query: 10 IEAGRRNGGERVDSTYYKSLIGSVRYLNTVRSDIVCGVGLRSRFME-P*DCH*QGAQRSL 186
I+ ++ GE VD T +KSL+GS+RYL R DI+ VG+ SR+ME P H + A+R L
Sbjct: 1069 IKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRIL 1128
Query: 187 RYIKGTLKDGI-------FMLVITM*NSLDTQIVTR---PGYAFHLGRGAISWSS----- 321
RYIKGT+ G+ + LV + + R G+ F++G A +W S
Sbjct: 1129 RYIKGTVNFGLHYSTTSDYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPI 1188
Query: 322 -TISCC 336
T+S C
Sbjct: 1189 VTLSTC 1194
Score = 26.9 bits (58), Expect(2) = 6e-13
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +2
Query: 323 QSVVALYANEA*YIAAESCATQAI*LTRILE 415
Q +V L EA Y+AA SC AI L +L+
Sbjct: 1186 QPIVTLSTCEAEYVAATSCVCHAIWLRNLLK 1216
>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 69.3 bits (168), Expect(2) = 6e-13
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 17/126 (13%)
Frame = +1
Query: 10 IEAGRRNGGERVDSTYYKSLIGSVRYLNTVRSDIVCGVGLRSRFME-P*DCH*QGAQRSL 186
I+ ++ GE VD T +KSL+GS+RYL R DI+ VG+ SR+ME P H + A+R L
Sbjct: 1049 IKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRIL 1108
Query: 187 RYIKGTLKDGI-------FMLVITM*NSLDTQIVTR---PGYAFHLGRGAISWSS----- 321
RYIKGT+ G+ + LV + + R G+ F++G A +W S
Sbjct: 1109 RYIKGTVNFGLHYSTTSDYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPI 1168
Query: 322 -TISCC 336
T+S C
Sbjct: 1169 VTLSTC 1174
Score = 26.9 bits (58), Expect(2) = 6e-13
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +2
Query: 323 QSVVALYANEA*YIAAESCATQAI*LTRILE 415
Q +V L EA Y+AA SC AI L +L+
Sbjct: 1166 QPIVTLSTCEAEYVAATSCVCHAIWLRNLLK 1196
>ref|NP_191692.1| copia-type polyprotein; protein id: At3g61330.1 [Arabidopsis
thaliana] gi|11278364|pir||T47925 copia-type polyprotein
- Arabidopsis thaliana gi|6850900|emb|CAB71063.1|
copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 68.9 bits (167), Expect(2) = 7e-13
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 17/126 (13%)
Frame = +1
Query: 10 IEAGRRNGGERVDSTYYKSLIGSVRYLNTVRSDIVCGVGLRSRFME-P*DCH*QGAQRSL 186
I+ ++ GE VD T +KSL+GS+RYL R DI+ VG+ SR+ME P H + A+R L
Sbjct: 1110 IKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRIL 1169
Query: 187 RYIKGTLKDGI-------FMLVITM*NSLDTQIVTR---PGYAFHLGRGAISWSS----- 321
RYIKGT+ G+ + LV + + R G+ F++G A +W S
Sbjct: 1170 RYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPI 1229
Query: 322 -TISCC 336
T+S C
Sbjct: 1230 VTLSTC 1235
Score = 26.9 bits (58), Expect(2) = 7e-13
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +2
Query: 323 QSVVALYANEA*YIAAESCATQAI*LTRILE 415
Q +V L EA Y+AA SC AI L +L+
Sbjct: 1227 QPIVTLSTCEAEYVAATSCVCHAIWLRNLLK 1257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 691,706,105
Number of Sequences: 1393205
Number of extensions: 14920877
Number of successful extensions: 38860
Number of sequences better than 10.0: 364
Number of HSP's better than 10.0 without gapping: 37056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38582
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41736604858
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
